Detail information of GWHGAAEX004190/evm.TU.scaffold_146.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14575.00E-82RNA binding protein (contains RRM repeats)
nrgi|743799514|ref|XP_010925497.1|1.64E-123PREDICTED: uncharacterized protein LOC105048014 [Elaeis guineensis]
trEMBLtr|M0S8K3|M0S8K3_MUSAM1.00E-114Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P16620_001}
TAIRAT3G137005.00E-82RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015121089732131160-
Transcript Sequence

Network for GWHGAAEX004190

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1881517.00E-07
PF00076.21RRM_12533145.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.760
SRR2545915Juvenile tuber51.380
SRP108465SRR5643513five period of Gastrodia elata55.110
SRR5643514five period of Gastrodia elata67.290
SRR5643515five period of Gastrodia elata52.630
SRR5643524five period of Gastrodia elata57.510
SRR5643525five period of Gastrodia elata60.860
SRR5643528five period of Gastrodia elata73.660
SRR5643658five period of Gastrodia elata69.750
SRR5643659five period of Gastrodia elata65.350
SRR5643660five period of Gastrodia elata68.780
SRR5643661five period of Gastrodia elata63.550
SRR5643662five period of Gastrodia elata68.620
SRR5643663five period of Gastrodia elata66.660
SRR5643664five period of Gastrodia elata66.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.130
SRR6049655Rhizomagastrodiae_C368-T10_good_160.000
SRR6049656Rhizomagastrodiae_C368-T07_good_154.110
SRR6049657Rhizomagastrodiae_C368-T07_good_147.040
SRR6049658Rhizomagastrodiae_C368-T04_good_159.910
SRR6049659Rhizomagastrodiae_C368-T04_good_146.490
SRR6049660Rhizomagastrodiae_C368-T01_good_148.550
SRR6049661Rhizomagastrodiae_C368-T04_good_148.950
SRR6049662Rhizomagastrodiae_C368-T01_good_152.940
SRR6049663Rhizomagastrodiae_C368-T01_good_151.760
SRR6049664Rhizomagastrodiae_C368-T10_good_160.110
SRR6049665Rhizomagastrodiae_C368-T10_good_160.110
SRP279888GastroGastrodia elata tuber 90.85
JuvenJuvenile tuber79.47
Mother_GastroMother tuber of Gastrodia elata 74.93
Mother_JuvenMother tuber of Juvenile 70.55