Gene detail

Detail information of GWHGAAEX004192/evm.TU.scaffold_146.99

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0246	Kinesin-like protein
nr	gi\|743800236\|ref\|XP_010925833.1\|	PREDICTED: kinesin-13A-like [Elaeis guineensis]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|M0TQU7\|M0TQU7_MUSAM	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR	AT3G16060	ATP binding microtubule motor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	2195701	2203717	+

Transcript Sequence
>GWHTAAEX004192 TCCCCCCCCCCCCTCTCTCTCTCTTTCTCATCCTTGTTTTCGACGGCCGGCGGCGATTCCGCTTACCGTGAACCGTCCGACGAAGCCAGTTAGTGCAAAGATGAACGCGGCAGCTGCCATGGGAGGAAGGCAGATGCAGAGATCGGGACATCAGAATCAACGGCAGTACTCCGATCAGAACTTTGTTGATTCTCTCTCTTCAGGCGCTGGAGGCGGCGCAAAGTGGCTGCAGAGCCTCTCTTCCACTGGATTCTCTTCTTCGCAGCAGGTGGAGTACTCGAGAATGCTACGGAGCGCGCAGAGGGGAATGAGCGGCGAGTTCATGCTATCCGTGGATCCTTCCACGCCGCCACCGAGCACCAGGTCAGCCAGCCAGAGGAAGACTGGCGACGATGTTTCGCTGACCGAGCTCAGTCCCGGGATCTTGGATCTTCAGTCGTTCGATACTGAGCTGCTTACGGATATACCAGCTTCTGGATTCTATGATGGTGCAGCCTCATTTGGGTATTCGCGAGGGCGTACTTTTGATGAGCCCGAGCCTAACGTTTATTCTAGCATGCAGTTTGGGAAAGTTCCTCCTTTACCAGACAATATTTTCTCCAAGGGTTTTGCATTAGACAAAGATAAGCCGGGTTCTGTTGCAAAGATAAAAGTAGTGGTAAGGAAACGACCTCTTAACAAGAAGGAAATATCAAAGAAAGAGGAGGACATCATTGCAATTGAACAGCATACCAATTCACTCACAGTTCATGAAACCAAGCTGAAGGTTGATCTTACAGAATATGTTGAGAAGCATGAATTTGTGTTTGATGCTGTTCTTGACGAAGATGTCTCAAATGATGAAGTCTATCGTGAAACAGTGGAGCCAATAATCCCAGCTATCTTTCAACGCACAAAGGCTACTTGCTTTGCTTATGGACAGACAGGAAGCGGGAAGACCTACACAATGCAACCTCTGCCTCTGCGAGCTTCTCAAGACATTCTAAGATTAATGCATCACGCGTATCGAAACCAAGGATTTCAATTATTTGTTAGTTTCTTCGAGATATATGGCGGGAAACTTTTTGATCTGCTAAATGACCGAAGAAAGCTCTGCATGAGGGAGGATGGCAAGCAACAAGTGTGCATAGTGGGATTGCAAGAGTACAGAGTGTCGAATGTGGAGACAATCAGGGAGCTGATTGAGAAGGGGAACGCAACGAGAAGCACCGGAACAACCGGCGCTAACGAGGAGTCCTCAAGATCTCACGCCATTCTTCAGCTTGCCATCAAGAAACTCACAGAAGTCACAGAATCAAAACCCTTCAAGAGGTTTGCCGATAGCAACGAATCAAAGCCTGCTCGAATTGTCGGCAAGATGTCCTTCATAGATTTGGCCGGCAGCGAGCGGGGCGCGGACACCACTGATAACGATAAACAGACCAGAATAGAAGGCGCCGAAATCAACAAGAGCCTGCTTGCCTTGAAAGAGTGTATTAGAGCTCTCGACAATGACCAGGTGCACATCCCCTTCCGAGGGAGCAAACTGACTGAAGTTCTGAGGGATTCGTTCATTGGGGACTCGCGCACTGTTATGATTTCGTGCATTTCTCCGAATTCGGGTTCGTGTGAGCACACGCTGAACACACTGAGATATGCTGATAGAGTGAAGAGCCTAACCAAGGGCAGCAATCCAAAGAAGGATCTCACTTCTTCGGCACCAAATCTGAGAGAGTCGACAATCGTACCTGTTTCATCGGTTCCACCCAATTACTCTGCGACTGACAACGGCGGCAACAACAACAACGAGCACACTAATGAGCCGAATAAGTTTGGGTGGTCCAAACACTTTGTTAGAGATCCGTCCCCTCCTTCGAACGTGGAGGATGTACGGCTGGCATCTTCTTACTTGAATCGCTCCAACCAGAACAGAGGTTCCAGCAATTCTGAGGACCGTGACAACGTCTCCTCTGGCGGCGCTGCTTACGAGCAATCCTACAAGCAGTCCTGGAGGAAGGCAGACGCAAGGTGGCCCAGCGGCACTTACGATGCCACAAATGTGAATAACCCGAATTCAGATGATGATTTGAACGACCTCTTAAAGGAAGAAGAGGATCTCGTTATCGCGCACCGGAGGCAGGTTGAGGAGACAATAAACATTGTGAAGGAGGAGATGAAGCTATTGGAGGAAATTGATCAGCCCGGCAATCAGCTCGACGATTACATCGCCAGGTTGAATGCCGTCCTCTCGCAAAAGGCGGCCGGAATAGTGAGCCTGCAGGCGAGACTGGCAAATTTTCAGAGGCGTTTGACGGAACAAAATGTTCTGATTTCTTCATTGGGTCTATGATCTTTTTTTTTTTCTTCCATAAAAGTTTCTTTTATCTGCTGCTGCTGCTGATGATGAGCGCCACATCTATATGCTATATATACATATATATAAAAGTAAGAAAGATTTGGGTTGTTACCACTGTGCAAGGAAAGCAGGGAACGATTGAGGGGGTCATAGCAGAAGTTACCTGCTGCTGTGCTCTTGTTTTTTTATTTATGATCTTTGGTATTCATAATATAATATAGGATGAATGTTGGTTTTTTTTGTTTTTTAATGCATTGTAACTCCGGAAATTCATGTTTCCAGGTTGAGATTGTTGTCTCTAATCTTAACCCCAAAAATAATAAGGTGGAGCCTGAATTTAAGGTGTAATTTCATCTTTACATTGTTTGGACTTGATAAGCAAAAACCTTTTGATGCCTCTGCTAATAAAATGGAGTGCATGAATTGTTCCCAAGTTAAAAGAGGAAGAGAAGTCTGGGATGAAATCATTACAAAGGATCTTCTTCTCTATTTG

Network for GWHGAAEX004192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.22	Kinesin	188	518	2.40E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	Biological Process	microtubule-based movement
GO:0005524	Molecular Function	ATP binding
GO:0003777	Molecular Function	microtubule motor activity
GO:0008017	Molecular Function	microtubule binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.760
SRP064423	SRR2545915	Juvenile tuber	41.300
SRP108465	SRR5643513	five period of Gastrodia elata	50.810
	SRR5643514	five period of Gastrodia elata	50.130
	SRR5643515	five period of Gastrodia elata	52.480
	SRR5643524	five period of Gastrodia elata	49.940
	SRR5643525	five period of Gastrodia elata	33.880
	SRR5643528	five period of Gastrodia elata	40.000
	SRR5643658	five period of Gastrodia elata	41.860
	SRR5643659	five period of Gastrodia elata	43.110
	SRR5643660	five period of Gastrodia elata	45.330
	SRR5643661	five period of Gastrodia elata	43.460
	SRR5643662	five period of Gastrodia elata	49.090
	SRR5643663	five period of Gastrodia elata	42.450
	SRR5643664	five period of Gastrodia elata	39.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.410
SRP279888	Gastro	Gastrodia elata tuber	43.83
	Juven	Juvenile tuber	71.72
	Mother_Gastro	Mother tuber of Gastrodia elata	61.91
	Mother_Juven	Mother tuber of Juvenile	96.74