Detail information of GWHGAAEX004195/evm.TU.scaffold_146.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|156937586|ref|YP_001435382.1| | 9.00E-15 | 50S ribosomal protein L37 [Ignicoccus hospitalis KIN4/I] |
| KOG | KOG0402 | 2.00E-40 | 60S ribosomal protein L37 |
| nr | gi|695036536|ref|XP_009405728.1| | 2.62E-42 | PREDICTED: 60S ribosomal protein L37a isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q5QM99|RL37A_ORYSJ | 7.00E-43 | 60S ribosomal protein L37a |
| trEMBL | tr|M0T9B3|M0T9B3_MUSAM | 2.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P22650_001} |
| TAIR | AT3G10950 | 2.00E-40 | Zinc-binding ribosomal protein family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2255064 | 2266345 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004195
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01780.18 | Ribosomal_L37ae | 46 | 113 | 3.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02921 | RP-L37Ae, RPL37A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.930 |
| SRR5643514 | five period of Gastrodia elata | 44.610 | |
| SRR5643515 | five period of Gastrodia elata | 22.640 | |
| SRR5643524 | five period of Gastrodia elata | 29.810 | |
| SRR5643525 | five period of Gastrodia elata | 53.710 | |
| SRR5643528 | five period of Gastrodia elata | 38.430 | |
| SRR5643658 | five period of Gastrodia elata | 30.530 | |
| SRR5643659 | five period of Gastrodia elata | 23.270 | |
| SRR5643660 | five period of Gastrodia elata | 19.290 | |
| SRR5643661 | five period of Gastrodia elata | 16.640 | |
| SRR5643662 | five period of Gastrodia elata | 9.600 | |
| SRR5643663 | five period of Gastrodia elata | 18.460 | |
| SRR5643664 | five period of Gastrodia elata | 15.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 83.74 |
| Juven | Juvenile tuber | 63.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.14 | |
| Mother_Juven | Mother tuber of Juvenile | 67.31 |