Detail information of GWHGAAEX004197/evm.TU.scaffold_146.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668773|ref|NP_247573.1| | 1.00E-16 | 50S ribosomal protein L37Ae [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG0402 | 4.00E-56 | 60S ribosomal protein L37 |
| nr | gi|595849622|ref|XP_007209764.1| | 1.36E-58 | hypothetical protein PRUPE_ppa013350mg [Prunus persica] |
| Swissprot | tr|Q5QM99|RL37A_ORYSJ | 2.00E-58 | 60S ribosomal protein L37a |
| trEMBL | tr|M5WNW1|M5WNW1_PRUPE | 5.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10963.1} |
| TAIR | AT3G10950 | 4.00E-56 | Zinc-binding ribosomal protein family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2383565 | 2389294 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004197
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01780.18 | Ribosomal_L37ae | 4 | 88 | 1.80E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02921 | RP-L37Ae, RPL37A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.730 |
| SRR2545915 | Juvenile tuber | 31.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.400 |
| SRR5643514 | five period of Gastrodia elata | 61.870 | |
| SRR5643515 | five period of Gastrodia elata | 66.880 | |
| SRR5643524 | five period of Gastrodia elata | 43.550 | |
| SRR5643525 | five period of Gastrodia elata | 56.520 | |
| SRR5643528 | five period of Gastrodia elata | 36.230 | |
| SRR5643658 | five period of Gastrodia elata | 50.040 | |
| SRR5643659 | five period of Gastrodia elata | 69.970 | |
| SRR5643660 | five period of Gastrodia elata | 43.440 | |
| SRR5643661 | five period of Gastrodia elata | 52.310 | |
| SRR5643662 | five period of Gastrodia elata | 60.360 | |
| SRR5643663 | five period of Gastrodia elata | 50.520 | |
| SRR5643664 | five period of Gastrodia elata | 40.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 59.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 110.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 110.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 55.46 |
| Juven | Juvenile tuber | 52.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.36 | |
| Mother_Juven | Mother tuber of Juvenile | 37.06 |