Detail information of GWHGAAEX004199/evm.TU.scaffold_146.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|410671135|ref|YP_006923506.1| | 2.00E-14 | Rad3-related DNA helicase [Methanolobus psychrophilus R15] |
| KOG | KOG1133 | 0 | Helicase of the DEAD superfamily |
| nr | gi|743771031|ref|XP_010915803.1| | 0 | PREDICTED: probable ATP-dependent RNA helicase DDX11 [Elaeis guineensis] |
| Swissprot | tr|Q8W4M7|ERCC2_ARATH | 3.00E-41 | DNA repair helicase UVH6 |
| trEMBL | tr|M0T6V9|M0T6V9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P14110_001} |
| TAIR | AT1G79890 | 0 | RAD3-like DNA-binding helicase protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2430325 | 2441314 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004199
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06733.14 | DEAD_2 | 182 | 368 | 5.50E-53 |
| PF13307.5 | Helicase_C_2 | 633 | 828 | 2.40E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0016818 | Molecular Function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.570 |
| SRR2545915 | Juvenile tuber | 3.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.170 |
| SRR5643514 | five period of Gastrodia elata | 4.390 | |
| SRR5643515 | five period of Gastrodia elata | 4.920 | |
| SRR5643524 | five period of Gastrodia elata | 3.930 | |
| SRR5643525 | five period of Gastrodia elata | 4.920 | |
| SRR5643528 | five period of Gastrodia elata | 4.220 | |
| SRR5643658 | five period of Gastrodia elata | 3.610 | |
| SRR5643659 | five period of Gastrodia elata | 5.590 | |
| SRR5643660 | five period of Gastrodia elata | 4.930 | |
| SRR5643661 | five period of Gastrodia elata | 5.440 | |
| SRR5643662 | five period of Gastrodia elata | 5.330 | |
| SRR5643663 | five period of Gastrodia elata | 6.020 | |
| SRR5643664 | five period of Gastrodia elata | 3.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.33 |
| Juven | Juvenile tuber | 4.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.64 | |
| Mother_Juven | Mother tuber of Juvenile | 4.19 |