Detail information of GWHGAAEX004200/evm.TU.scaffold_146.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383456992|ref|YP_005370981.1| | 8.00E-25 | serine/threonine protein kinase [Corallococcus coralloides DSM 2259] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|698460853|ref|XP_009781639.1| | 0 | PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X1 [Nicotiana sylvestris] |
| Swissprot | tr|Q9LK03|PERK2_ARATH | 0 | Proline-rich receptor-like protein kinase PERK2 |
| trEMBL | tr|A1IGC6|A1IGC6_TOBAC | 0 | PERK1-like protein kinase {ECO:0000313|EMBL:BAF43699.1} |
| TAIR | AT3G24400 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2444775 | 2449865 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004200
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 309 | 523 | 6.70E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_PERK-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.850 |
| SRR2545915 | Juvenile tuber | 23.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.110 |
| SRR5643514 | five period of Gastrodia elata | 16.420 | |
| SRR5643515 | five period of Gastrodia elata | 45.360 | |
| SRR5643524 | five period of Gastrodia elata | 17.700 | |
| SRR5643525 | five period of Gastrodia elata | 34.420 | |
| SRR5643528 | five period of Gastrodia elata | 47.200 | |
| SRR5643658 | five period of Gastrodia elata | 28.830 | |
| SRR5643659 | five period of Gastrodia elata | 37.040 | |
| SRR5643660 | five period of Gastrodia elata | 25.440 | |
| SRR5643661 | five period of Gastrodia elata | 37.460 | |
| SRR5643662 | five period of Gastrodia elata | 33.720 | |
| SRR5643663 | five period of Gastrodia elata | 29.130 | |
| SRR5643664 | five period of Gastrodia elata | 42.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.97 |
| Juven | Juvenile tuber | 19.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 66.28 | |
| Mother_Juven | Mother tuber of Juvenile | 54.16 |