Detail information of GWHGAAEX004201/evm.TU.scaffold_146.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 7.00E-24 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0394 | 3.00E-137 | Ras-related GTPase |
| nr | gi|672107183|ref|XP_008798405.1| | 2.64E-146 | PREDICTED: ras-related protein Rab7-like [Phoenix dactylifera] |
| Swissprot | tr|O24461|RAB7_PRUAR | 2.00E-144 | Ras-related protein Rab7 |
| trEMBL | tr|D7U0H2|D7U0H2_VITVI | 9.00E-145 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI36118.3} |
| TAIR | AT1G52280 | 3.00E-137 | RAB GTPase homolog G3D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2451402 | 2464526 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004201
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 10 | 177 | 7.60E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07897 | RAB7A | Endocytosis | map04144 |
| Phagosome | map04145 | ||
| Autophagy - animal | map04140 | ||
| Autophagy - yeast | map04138 | ||
| Mitophagy - animal | map04137 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 79.150 |
| SRR2545915 | Juvenile tuber | 78.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 100.510 |
| SRR5643514 | five period of Gastrodia elata | 127.040 | |
| SRR5643515 | five period of Gastrodia elata | 105.000 | |
| SRR5643524 | five period of Gastrodia elata | 117.170 | |
| SRR5643525 | five period of Gastrodia elata | 196.540 | |
| SRR5643528 | five period of Gastrodia elata | 245.630 | |
| SRR5643658 | five period of Gastrodia elata | 201.850 | |
| SRR5643659 | five period of Gastrodia elata | 74.520 | |
| SRR5643660 | five period of Gastrodia elata | 70.450 | |
| SRR5643661 | five period of Gastrodia elata | 77.420 | |
| SRR5643662 | five period of Gastrodia elata | 68.400 | |
| SRR5643663 | five period of Gastrodia elata | 64.210 | |
| SRR5643664 | five period of Gastrodia elata | 65.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 92.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 109.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 104.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 83.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 105.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 102.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 89.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 110.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 109.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 130.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 130.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.75 |
| Juven | Juvenile tuber | 96.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 215.76 | |
| Mother_Juven | Mother tuber of Juvenile | 145.09 |