Detail information of GWHGAAEX004202/evm.TU.scaffold_146.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284033013|ref|YP_003382944.1| | 2.00E-17 | peptidase S8/S53 subtilisin kexin sedolisin [Kribbella flavida DSM 17836] |
| KOG | KOG4266 | 0 | Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily |
| nr | gi|672142378|ref|XP_008795050.1| | 0 | PREDICTED: membrane-bound transcription factor site-1 protease isoform X2 [Phoenix dactylifera] |
| trEMBL | tr|A0A061GNR1|A0A061GNR1_THECC | 0 | Site-1 protease, putative isoform 2 {ECO:0000313|EMBL:EOY30782.1} |
| TAIR | AT5G19660 | 0 | SITE-1 protease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2465937 | 2488002 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004202
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00082.21 | Peptidase_S8 | 1 | 165 | 4.50E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08653 | MBTPS1 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.020 |
| SRR2545915 | Juvenile tuber | 13.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.260 |
| SRR5643514 | five period of Gastrodia elata | 9.760 | |
| SRR5643515 | five period of Gastrodia elata | 7.360 | |
| SRR5643524 | five period of Gastrodia elata | 8.220 | |
| SRR5643525 | five period of Gastrodia elata | 11.470 | |
| SRR5643528 | five period of Gastrodia elata | 8.260 | |
| SRR5643658 | five period of Gastrodia elata | 9.420 | |
| SRR5643659 | five period of Gastrodia elata | 12.910 | |
| SRR5643660 | five period of Gastrodia elata | 11.720 | |
| SRR5643661 | five period of Gastrodia elata | 10.390 | |
| SRR5643662 | five period of Gastrodia elata | 9.920 | |
| SRR5643663 | five period of Gastrodia elata | 12.870 | |
| SRR5643664 | five period of Gastrodia elata | 11.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.66 |
| Juven | Juvenile tuber | 20.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.99 | |
| Mother_Juven | Mother tuber of Juvenile | 13.85 |