Gene detail

Detail information of GWHGAAEX004207/evm.TU.scaffold_146.115

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2169	2.00E-71	Zn-finger transcription factor
nr	gi\|743770988\|ref\|XP_010915781.1\|	0	PREDICTED: uncharacterized protein LOC105040788 isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q6L4L4\|SIZ1_ORYSJ	1.00E-13	E3 SUMO-protein ligase SIZ1
trEMBL	tr\|K7VAC5\|K7VAC5_MAIZE	9.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:AFW85686.1, ECO:0000313\|EnsemblPlants:GRMZM2G075582_P01}
TAIR	AT5G41580	2.00E-71	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	2584423	2637491	-

Transcript Sequence
>GWHTAAEX004207 CATAAATGCATTAGTCGCTGTTTAGAGCGTTACTCCTCTCGAAGCAAGGGAAGGAAATATGATGAGCACTGTTCCTCAGTCAATCGCGGTGACTGCAATGGCGGCAGCCAATGCTGCGGCCGCTGCTGCCATAGGTTCGTCGACGGCCCCTCCTGCAACTATCGGACCGCTTTTATTTGCAGAGCAAGCCAACAACCTCCGTCTAATGGCTGTTTACGATCGCATCTCCCTTTATTTAAGTGGCGCTGCCCGTTTCGAGCCTTCTGATGTGATTCGCGTCTGCTACTGCTTCGCCAAGGCTATTGATTGTTCTCTCACACTTAATGATATCCCTGGAATTGCTTCTCGCTTGCCTCCACTAGTCAAAAAGGTTTATGAGTGGAGGAAGAATGCTGCTCTTCAGTCAGCTATCATGATGGTGCTCATCTCTATCAAGAATGCATGCAAAAGGGGATGGTTTCGTACTGCGGACTCAGAGGAGCTTCTTTGCATGGCGGATGAGTTGTTTGGAAGATATTGTACGGAATTGTGTCCTAACATTCATGTTAACCATGCTTATGATACTATTTCCAAAGTTATGCCAAGGTTCTATCCTCGTTTGACTCTGTGCAGCTTAATTATTTCGTTTGAGGCCAAGCCCGGTTATGATGTTCTGATGTCTGATTTCCATTCCCCAAAGAACCACCATCCAGAACAAAAAATAGTGTTATTTGTTGTTAAGACAGAAAATCTGGAAACCTCTTCTTGTATAACAAGTCCTCCACAAGTGAGCTTCTTGATAAATGGAAGAGGTGTGATGAAAAGGAATAACGTCTCTCTGGATTCTGGCCCTCAACTTCCAACAGACATATCCAAAATGCTCAAGTATGGAATAAATATTCTTCAGACAATTGGATATTTTGATGGTACTTACTTGATAGCGATAGCGTATATGAGCAAGCTGGCTAACTACACTCTCCCTGCGCTAAAAGATTATGTCCAACCTGTTCTAACAGCTCTTGATTCTGATTCTGAAATTATTGAGGGGCCATCAAGAATATTGCTTAGTTGTCCAATAAGTTTCAAACGAATGAAAACTCCGGTTAAAGGCCATCTCTGCAAGCATCACCAGTGCTTCGATTACGAAAATTTCATGGAAATGAACTCAAGGAAGCCGATCTGGCGTTGCCCTCATTGCAACCAGCCCGTCAGCATGGCCGACCTGCGTATCGACCAAAACATGGTCAAGATATTAGGTGAGGTGGGAGAAGAGGTGACTGAAGTAGTCATTCACGCAGATGGATCATGGAATGTGGTTTCCGAGCAGGGGAGGTGCGCCGCAGATCGGCCTTACGATGAAGCTCAAATTCTCGACCAAGCTGACGACATGGAGTGCGAAGTGAACAGATCCAAAATTCCGGTGGCCGAACACGTGGATCTGACGATGGAAGAAGATGGCAATTGCAGCTTCCTAACCCAAGATGGTTGTTATGATCGCATCATTGAGGAAGCTGAAGACAGGAAACCGTTCTCTGATTCCATGCCCCAGTTTCTTGCTAGCCATGCTCCTTCTCAGGCTCCACCAGCCTATCAGCTAGGAAATAGTTTGAAGCAGCCGACGTTCTTTCCTTCTTATGCCGCCAATGCATCTCCTTTACCGGATCAAACCCACATAGGTGTTGGTAATGCAAGTGAGAGAATGGCAGGGCGGGCGGGCTTCACCATGATTATCGATAGGACCCCTACTGCAGTTCAGGCCCTTCCTGTGCCGCCGCCGCTCCAGCAGATTCAGGCTGCTTCCCGGAGATTGCATTCAAATATGATCGATTGTGCATTGGCTCCTAATTTATCTCCTAGGCAATATCAAGCGGTGAATATGTCAACGCCCTCTCCTTTGGACACTTTTGGCGGAGGATTAATTAGCAACAACATGGACGCGCAGCAACAGCAGCAGCAGCAATTCACAAGGATTACGGATGCTTCGGCAATGCAGGATCTCACTCAACAGAACCAGCAATATGCTGTAAGTGAGGCGGCGCAGGCTGCGTCGCCGAGCACATTAAGCAGCAGATCGCCGTTCAGCCATCGGCGGGGATCGATAGACATGGACGCTTTTCGAGCCTCGCTTCAGCCGTCGCCCTTCGCACGTACGCCCTCTGTCCTGACGCCGCCGGGCTTCAGGACGCAGTCTCCGAACCTCCTGCCGTCCGCCGCCTGGCAGGGACCCCACGGCGGCTTCGGGAACCATCAGCGGCTGCCTCCGCAGTTCCTGCGTTCACTCCCGGCGTCCGCCGCAGCGCCCAACTCTGCGTCGCCCCGGGAGAACACTAGGGCGATCGGCGGTGACCGCTGGAGGAGCTTGACGGGAGGGGGAACGTCTTCGCCGGAGCAGGGTTGGAGGCCAACGGGCAGAATGAGGGGCAGTTTGACGGGAAGCGACTATTCCGCAGTCATAAGCAATTATATGCCACCGACGGCGGTCAACAATCTCATGGCCCATGGGGCGACGGCAGCCGGCCAGGATGCCTCGGGAGATGCTAGGATTTGAAATTGCTCGCCGGAATCTTTTGGGTTTCTATTTTGCTAAATTTTCTTTTTTTGTTTTATTATTATTATTATTA

Network for GWHGAAEX004207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02891.19	zf-MIZ	329	375	1.20E-19

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K04706	PIAS1	Ubiquitin mediated proteolysis	map04120
K04706	PIAS1	JAK-STAT signaling pathway	map04630

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.430
SRP064423	SRR2545915	Juvenile tuber	23.360
SRP108465	SRR5643513	five period of Gastrodia elata	22.350
	SRR5643514	five period of Gastrodia elata	19.300
	SRR5643515	five period of Gastrodia elata	20.760
	SRR5643524	five period of Gastrodia elata	20.770
	SRR5643525	five period of Gastrodia elata	17.230
	SRR5643528	five period of Gastrodia elata	15.730
	SRR5643658	five period of Gastrodia elata	22.250
	SRR5643659	five period of Gastrodia elata	22.880
	SRR5643660	five period of Gastrodia elata	26.910
	SRR5643661	five period of Gastrodia elata	26.500
	SRR5643662	five period of Gastrodia elata	23.920
	SRR5643663	five period of Gastrodia elata	24.220
	SRR5643664	five period of Gastrodia elata	29.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.620
SRP279888	Gastro	Gastrodia elata tuber	25.58
	Juven	Juvenile tuber	48.51
	Mother_Gastro	Mother tuber of Gastrodia elata	21.47
	Mother_Juven	Mother tuber of Juvenile	34.18