Detail information of GWHGAAEX004210/evm.TU.scaffold_147.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302670881|ref|YP_003830841.1| | 6.00E-14 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| nr | gi|743803903|ref|XP_010927058.1| | 2.25E-144 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Elaeis guineensis] |
| Swissprot | tr|Q38910|XTH23_ARATH | 6.00E-131 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor) |
| trEMBL | tr|Q84JX3|Q84JX3_CUCSA | 1.00E-141 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT4G25810 | 2.00E-130 | xyloglucan endotransglycosylase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 41984 | 44940 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004210
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 35 | 216 | 6.30E-62 |
| PF06955.11 | XET_C | 242 | 286 | 3.50E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14504 | TCH4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0005618 | Cellular Component | cell wall |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1007.580 |
| SRR2545915 | Juvenile tuber | 915.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 512.430 |
| SRR5643514 | five period of Gastrodia elata | 364.390 | |
| SRR5643515 | five period of Gastrodia elata | 905.830 | |
| SRR5643524 | five period of Gastrodia elata | 378.090 | |
| SRR5643525 | five period of Gastrodia elata | 2707.480 | |
| SRR5643528 | five period of Gastrodia elata | 763.780 | |
| SRR5643658 | five period of Gastrodia elata | 942.210 | |
| SRR5643659 | five period of Gastrodia elata | 3049.980 | |
| SRR5643660 | five period of Gastrodia elata | 3513.970 | |
| SRR5643661 | five period of Gastrodia elata | 3753.060 | |
| SRR5643662 | five period of Gastrodia elata | 2692.220 | |
| SRR5643663 | five period of Gastrodia elata | 3243.010 | |
| SRR5643664 | five period of Gastrodia elata | 3367.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 975.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 733.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 705.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1921.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2226.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2888.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1211.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1498.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 306.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 328.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 243.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 243.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3,687.76 |
| Juven | Juvenile tuber | 221.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 452.40 | |
| Mother_Juven | Mother tuber of Juvenile | 328.79 |