Detail information of GWHGAAEX004211/evm.TU.scaffold_147.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743845571|ref|XP_010938619.1|8.73E-88PREDICTED: protein OSB3, chloroplastic/mitochondrial-like isoform X2 [Elaeis guineensis]
Swissprottr|Q8GWJ4|OSB3_ARATH2.00E-58Protein OSB3, chloroplastic/mitochondrial (Precursor)
trEMBLtr|F2ELQ5|F2ELQ5_HORVD7.00E-60Predicted protein {ECO:0000313|EMBL:BAK08277.1}
trEMBLtr|F2ELQ5|F2ELQ5_HORVD4.00E-24Predicted protein {ECO:0000313|EMBL:BAK08277.1}
TAIRAT4G200102.00E-45plastid transcriptionally active 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015092241125796-
Transcript Sequence

Network for GWHGAAEX004211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00436.24SSB851791.80E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003697Molecular Functionsingle-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms80.000
SRR2545915Juvenile tuber35.380
SRP108465SRR5643513five period of Gastrodia elata23.100
SRR5643514five period of Gastrodia elata28.720
SRR5643515five period of Gastrodia elata21.300
SRR5643524five period of Gastrodia elata26.040
SRR5643525five period of Gastrodia elata4.540
SRR5643528five period of Gastrodia elata4.530
SRR5643658five period of Gastrodia elata3.360
SRR5643659five period of Gastrodia elata10.640
SRR5643660five period of Gastrodia elata12.030
SRR5643661five period of Gastrodia elata11.290
SRR5643662five period of Gastrodia elata21.350
SRR5643663five period of Gastrodia elata13.960
SRR5643664five period of Gastrodia elata20.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.830
SRR6049655Rhizomagastrodiae_C368-T10_good_118.210
SRR6049656Rhizomagastrodiae_C368-T07_good_123.470
SRR6049657Rhizomagastrodiae_C368-T07_good_120.550
SRR6049658Rhizomagastrodiae_C368-T04_good_115.020
SRR6049659Rhizomagastrodiae_C368-T04_good_110.530
SRR6049660Rhizomagastrodiae_C368-T01_good_117.300
SRR6049661Rhizomagastrodiae_C368-T04_good_120.990
SRR6049662Rhizomagastrodiae_C368-T01_good_139.230
SRR6049663Rhizomagastrodiae_C368-T01_good_124.610
SRR6049664Rhizomagastrodiae_C368-T10_good_124.670
SRR6049665Rhizomagastrodiae_C368-T10_good_124.670
SRP279888GastroGastrodia elata tuber 12.45
JuvenJuvenile tuber27.37
Mother_GastroMother tuber of Gastrodia elata 5.09
Mother_JuvenMother tuber of Juvenile 11.12