Gene detail

Detail information of GWHGAAEX004212/evm.TU.scaffold_147.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	4.00E-67	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672163408\|ref\|XP_008801552.1\|	2.32E-92	PREDICTED: E3 ubiquitin-protein ligase RLIM-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	2.00E-33	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|M0SBY4\|M0SBY4_MUSAM	1.00E-83	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05160_001}
TAIR	AT5G24870	4.00E-67	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	126495	159258	-

Transcript Sequence
>GWHTAAEX004212 ATAACTATGTGCATATATGCTTTACAATAAGTAATTATTTTAGAAATATGGTTTTTTTCTATATTAAGATAAATTTTAGCTTGAATCAAAGTTATAGAGCATAATTGAATTAAGAACTTATAGTAAAACTCAACTTGTATTGTGATTAAATTGAGTTACTTTAAATTGATCTAGAATTGGCATTGGCTCAGCTCATTTTAATAAAAAATGGATAGAAGATTCATTTTATAAAAGTTTGAGTTAAACCCTGATGGTAAGAAAAATAGAAGGAATGAGAAGAATCTTAGTGATCATAAGAGGCTCAATTGTTGGCCAGCTCGTATGCATTTTTAGCTTAACCAATACTTTTAGTGAGTGGGTGTATTTTTGTGAAACTAACCCTAATCCTTAGTAAGATTTGTTTGGTTCTCTAAGCTAGTTTAAAATTTGGTACCGATGGTCAAATTAGACCATCTCTTTGGTGACTTGAAATTTAGGGCTATGTGTGTATAGGTGGCTAGTCAAGCTAGTTTATAATATGTAGCTACTAGGTTTATTCTTATTCTATGAAGTAATTGGACTTATGGGTGTGCAACAATGTTTTAATCGGGCATGTCAACAAGTCGATGTATTGGGTTGAGGAAAAACCTTAATTTGAACCCAACTCATTTGACAAAACTTGAATATGATCTACTAGTTAAATGATTCAAAACTTAAACTGACCTGACATGGCCTGTTAAACTTGCATTTCTTAAAGTGTTTATTTTCATATCAAAGCTGTTGCTTAGGGTCAAAACAGGCTATTCAGGATTAGTTTGTTTCATTTCAAGTCATTTTGGATCATTTTTTGGATTATTAAATGAATCCTTATGGGTTTAAACATGTTTTGTTAATTGAACCTGACCAAAATGTTAAATGGATAATTTCTGGAACATAAACTTGACCTACAATGTATTTGGGTTCTTGAGGCTGATTTTCTTGTGTTAGTTTTGAGTCATGTTGGTATGTTTGTTCAATTTTAGAGTCATTTTCTTATGGTGTGAAATTCATACCCTCTCAAAATGTTTCTTATTTATGTCTAACACTTAAATTTGATACTTTACTAAATTACTACAAAAATTCTTATTATTACATTAAAATTACTGATCCACTTAGCCTTTACCAATAATTACAAGTAATGAAATTTCATAATTAAACCTTAGCTTTGTAAATATCAATATTCGGGTGTTTTTAAACGTTATAATTTTTTGATCAAAATCTTTCCTTGTTAACTATTTGCTTGAAGACAAAGTGTATAGCTGGATGTCCTCTTTTTTCTTCTTGTTGCAGCATTTTGATTGCCCTACTTTTAGGTGTCTCCTTTTTTCAGTCTTTAAGCCTCTCTTTTTTTCATTTGTAGATTTTTTACTTGTTTACAAAATTTTGTTTCAGAAATCATGCACATTTTTGAACTGTAAGAATTAAAACTTGAACATTCCACTAATGCAGCTTTTTATGCCATGGATAGCCATACTGGAAAGAAAGTAGTAGGGAGCCTTGACATGTCGCGAAGTTTCCAATGCTGCAACCGCATAGGGTGCAGCACCAGACATAGTTCAATTGGAAACACGCAAAGCAATATTTCTGACAAACCCAAATACATGAGACCACCATTTCGCTTTAAAAATAGTAATTCTTCAGCCACAAGTTCATCCAGGTCTTATTCATCTGCCACCAACTTTGGTAAATATTGTCAGGAACCACGGATTCAAGCTTCTCTAAAAGAAGTCGCTGTAGCAGAAAGCCGCAATAGGCAAGCAGAGGGAAAAGCATATTTGAAGTGGGAGTTAGGGATTCCTGGACGAGCTGAAAGTGAACATTCAAGGAATCAAGATGGACCATTACTCAAACATTTATCTTCAACCCAACAGTTAAGTAGCCCCATTGCTACATCAACCTCACGATATGGCAAACAAGTTAGTAGAAGGCTTGGATCTGTCATTCAGGACACTGCAAGTTCATTTCTTCGGCGATCTTCTTCACAAAGATGTGATGCCCTTTCTCCAGGTTCTTCTGGTGGACTCAATACCAGAGGTGCTTCAGTCAGAAGAAAGTTACAGGATGGGGAAGGTTCCTCAAGGGGAATTTTATCTCAACGGGGTCGGAAAGTGCCTCAAGAAGCAGTAAAATATTCAAGAAATAAAACTTGCCAGGATATTGCAGTTTCCGTCAGAACACGACGGGGTGTTTCTGGTTTATCAAGTAGAACAGCTAGATTGAGTGAACCAAAATACAGACCCATTCAATTGGATGATCCTCTTTCGCTTGCACAACCATCACAAGTTTCATTATTGGCTCCGGAAGATGTTCAGGAGAGCTCCCCAACGTCTTTCTCATCTGATTTACCTTCTATTTTTAATGATTCTCCATTTACTCGAAGACCGGGATCAAGCAGTCTGAGCTCTGAAAACAGGATTCTTTCTAGTTCTGAAGATGGAGATGATTATAGACGCTTTAACATGGAAGGAATTGCTCAGGTATTATTAGCATTGGAAAGAATCGAACAAGATGAAGAGTTGACAAATGAGCAACTATTGGTGTTGGAGGCGAGCTTATTCTTGGGAAGTTTGAGCTTCTTTGATCAGCATAGAGATATGAGATTAGACATAGAGAATATGTCATATGAGGAGCTTTTGGCTCTAGAGGAAGAGATGGGAACTGTGAGTACAGCCCTCTCTGAAGAGGCTCTTTCTAAATGTATTAAGAGAAGCACATACAGATTGTGCTTCACTTTTCCAAGAACCTCTAGTCAAGTTGATGATGTTAAATGCAGCATTTGTCAGGAAGAGTACGTTGCAGGAGAAGAAGTGGGAAGTTTACCTTGTCAGCACTACTATCATGTTGACTGCATTTACCAATGGCTCAGACTAAAGAACTGGTGCCCGGAGCGATTCGCGAAGCTCAGGAGACGCCTTCGTTCGAACGAAGCCGAAGCTCAGATCGTTCGAAGCTCCGTTCCTTCGTCGGGAGCGATTCACCCAGCATTTCCAGTGACGGGAAGCCGCACGACGACTCTTCTCCTCTGTCACGGGGATCGCGATCTTCTCCTCCGGCTTAGCCTGCTTTTCCCAGGATAA

Network for GWHGAAEX004212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	436	475	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	83.500
SRP064423	SRR2545915	Juvenile tuber	38.890
SRP108465	SRR5643513	five period of Gastrodia elata	21.590
	SRR5643514	five period of Gastrodia elata	31.800
	SRR5643515	five period of Gastrodia elata	26.640
	SRR5643524	five period of Gastrodia elata	32.960
	SRR5643525	five period of Gastrodia elata	58.400
	SRR5643528	five period of Gastrodia elata	87.530
	SRR5643658	five period of Gastrodia elata	80.530
	SRR5643659	five period of Gastrodia elata	12.070
	SRR5643660	five period of Gastrodia elata	13.440
	SRR5643661	five period of Gastrodia elata	12.600
	SRR5643662	five period of Gastrodia elata	15.050
	SRR5643663	five period of Gastrodia elata	12.820
	SRR5643664	five period of Gastrodia elata	15.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.770
SRP279888	Gastro	Gastrodia elata tuber	17.94
	Juven	Juvenile tuber	23.03
	Mother_Gastro	Mother tuber of Gastrodia elata	81.88
	Mother_Juven	Mother tuber of Juvenile	54.78