Gene detail

Detail information of GWHGAAEX004218/evm.TU.scaffold_147.12

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743811912\|ref\|XP_010929284.1\|	4.89E-111	PREDICTED: uncharacterized protein LOC105050813 [Elaeis guineensis]
trEMBL	tr\|V7AWV6\|V7AWV6_PHAVU	1.00E-82	Uncharacterized protein {ECO:0000313\|EMBL:ESW09113.1}
TAIR	AT4G31440	1.00E-49	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	361175	363457	-

Transcript Sequence
>GWHTAAEX004218 AGAGAGAGAGAGAGAGAGAGGGAGCAAGTATCGAAGCTCAACTCAAAGGAGGCTAGCTTCGAATTCTAGCGCTGCTGCGGGCATCGAAAGATTGGCTGGAGTTTCATCCCTAGCTCTGACCGCTGGAATTCTATAATCTGCTGCTCTGCCCGAACTTTCAATTCTAGGGTTTGGAGTCACCCGGGGAAATAAAAAATCTCGTTGTTTTTCTCCTCTCATCTACTTGGAAATGCTATTGGCGCCTGCATTGTCGTTACTGAGATATGACGATTTTGGGACGGAAGTTCGATCTCTCCACAAGAAGTAGCGCATACCCTAATCATTAGAGGAAAGGCTGCAGCTGTGGGAAAGCGCTATTATCGGCATTCATGTGAGTAGCTCCTTCTTTCCCCGTTTTTGGCATGGCTACTGTTCATTGAAGAATGCCACAGCTGACGGCGGCAATGTCGCCTTCTCGGATCGACCTTGGTGAGCTGAAGTTGCAGTTAACCAAGCGGCTGGGGCCGGAGCGTTCTCGCCGGTACTTCAGCTACCTCCACCAGCTGCTTTCGCTGAAGCTAAGCAAGTCTGAGTTTAACAAGCTCTGTTGCTTGACCATTGGGCGGGAGAACATTCCCCTTCACAACCAGCTCGTCAAGTCTGTGATAAAGAATGCTTATCAGGCTAAAACTCCTCCTCCATTAAAAAAGTCCTTGCAAAGGGAAGATGTGAAACCTGCTCATTCTCTCATATGGTCAAATGGGGAAATTCTGCCGCAATCTCCAAGGCGGCGAAGGTCAGTTATTCAGAGAAGCAAGCTCGGACTCAGTGAAAAGACAGATGTTTCTGTACTTGAGAATGGCGACTTAGGCCATCGTGATTTGAAGAGAGTTTGTGATGGTCAAGATGGCGAGCAAGTTGAGCAAGCTGCTAAAAGACAACGCCCTGAAAGCAATGGCATTGGTGAAGCGGGTTTTGTCAATGATGGAGACTTTATGAAGCAGAAGAATGATCTGAAGCTAATACATGGCCCACTTGAAGCTCCTCTTGGGATTTCATTCAGTTCAGCAAATGTGAGCAGGGCAAAAAGATCCCTGACTGAATTAGGGAGTACTAGTGCTGGTAGCTTTTGTGGTTCCTCGAATTGTGGTGAGCTTTCCCACTCTGAAGATTTGAAAAGAAGAATGGAAAAGATTGTTGAAAGGCATGGCCTTGCAGGAGTTACTCTGGACTCTGCTAATTTATTGAATTATGGCCTGGATGCTTATTTGAAGCGGCTGATTAAATCATCCATTGACTTAGTGCGTGCAAGGGTAGGCTCTGAGACAATAAAGCAGCAGATAGTGAAGCAGAAGAACCATGATAGGCCCATAAATGGTATTTGGCAGGACAATTCCGTGCAAATGCGTGGTGGTGGCCCTCTAGACTTGCAGGAGAGGAAGTGCTGTTTGATAACTCCGCAGGATTTTACCATAGCAATGAAGCTGAACCCACAGCAACTAGGGGAAAATTCAGCATTGTGGCTTGAAAAGATATGCTTCCATTCATTTGAAGAGTAACACCTGCTAGGTCAAGTCTTTAGTTCTGTTGGTAACTATGGCTGGTGACAATCCATGTATGCAAGGGCTGGCCATGTGTAAATCAACATGGATATATTTGAAGCAGGATTTTTTTGGTAGGCCCCTGATTCAATGCCACATATACAGCAGAATACATTCCAGAGCATTCATTTATGCAGGATAAATAAAGTTTTACTGCTGCGTAGTCCCTCATAGCACGTTCAGCATCTTTGAGGTGGTGCATTTGCATGAATGGAGTTGTAGGGATATTATGCTTAAGCTTAACAAATGCAGGAAGACTCCAGACACAGTTTTGCAGGGATACTTTGTGTAACTTATTAATTTTTATTTTATAGTATCTGCAAGTTATGGCTTTTGTATTACCAATTGGTTAAATTTCTTAGGTAGTTCTGATACCAATTTCATGTACTGTACCAAATTATTTAAAGCATGAATCTTTGAATCATTTGATACTCAAAGGCAGTCTAATGGATGCATTATTTCTTAATGCCCTCTTGTCAGCTATTAAATTGTACTATATATTTCATTGTCGAAGTTGTTGTTTCTTG

Network for GWHGAAEX004218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12767.6	SAGA-Tad1	9	287	2.80E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0070461	Cellular Component	SAGA-type complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.490
SRP064423	SRR2545915	Juvenile tuber	6.680
SRP108465	SRR5643513	five period of Gastrodia elata	6.650
	SRR5643514	five period of Gastrodia elata	6.240
	SRR5643515	five period of Gastrodia elata	6.650
	SRR5643524	five period of Gastrodia elata	5.740
	SRR5643525	five period of Gastrodia elata	10.170
	SRR5643528	five period of Gastrodia elata	8.950
	SRR5643658	five period of Gastrodia elata	5.980
	SRR5643659	five period of Gastrodia elata	8.030
	SRR5643660	five period of Gastrodia elata	7.280
	SRR5643661	five period of Gastrodia elata	6.910
	SRR5643662	five period of Gastrodia elata	8.120
	SRR5643663	five period of Gastrodia elata	8.360
	SRR5643664	five period of Gastrodia elata	7.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.730
SRP279888	Gastro	Gastrodia elata tuber	8.68
	Juven	Juvenile tuber	6.64
	Mother_Gastro	Mother tuber of Gastrodia elata	15.90
	Mother_Juven	Mother tuber of Juvenile	13.47