Detail information of GWHGAAEX004220/evm.TU.scaffold_147.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743767840|ref|XP_010914194.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Elaeis guineensis] |
| Swissprot | tr|Q9FFG8|PP417_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g44230 |
| trEMBL | tr|F6GWS8|F6GWS8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB44413.1} |
| TAIR | AT5G44230 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 446773 | 449755 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004220
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 160 | 187 | 2.50E-05 |
| PF01535.19 | PPR | 190 | 212 | 0.01 |
| PF13041.5 | PPR_2 | 216 | 263 | 3.00E-07 |
| PF01535.19 | PPR | 292 | 315 | 0.00039 |
| PF13041.5 | PPR_2 | 317 | 366 | 1.70E-07 |
| PF01535.19 | PPR | 394 | 418 | 0.00049 |
| PF14432.5 | DYW_deaminase | 495 | 617 | 3.80E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.870 |
| SRR2545915 | Juvenile tuber | 2.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.820 |
| SRR5643514 | five period of Gastrodia elata | 2.550 | |
| SRR5643515 | five period of Gastrodia elata | 3.810 | |
| SRR5643524 | five period of Gastrodia elata | 2.030 | |
| SRR5643525 | five period of Gastrodia elata | 2.100 | |
| SRR5643528 | five period of Gastrodia elata | 1.250 | |
| SRR5643658 | five period of Gastrodia elata | 1.270 | |
| SRR5643659 | five period of Gastrodia elata | 6.400 | |
| SRR5643660 | five period of Gastrodia elata | 5.830 | |
| SRR5643661 | five period of Gastrodia elata | 6.360 | |
| SRR5643662 | five period of Gastrodia elata | 6.300 | |
| SRR5643663 | five period of Gastrodia elata | 5.570 | |
| SRR5643664 | five period of Gastrodia elata | 5.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.43 |
| Juven | Juvenile tuber | 2.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.70 | |
| Mother_Juven | Mother tuber of Juvenile | 1.48 |