Detail information of GWHGAAEX004232/evm.TU.scaffold_147.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32639.00E-35Nucleic acid binding protein
nrgi|674884579|emb|CDY47941.1|1.60E-38BnaA02g08150D [Brassica napus]
trEMBLtr|A0A078IDF8|A0A078IDF8_BRANA6.00E-39BnaA02g08150D protein {ECO:0000313|EMBL:CDY47941.1}
TAIRAT5G573709.00E-35Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000150785439810192+
Transcript Sequence

Network for GWHGAAEX004232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08648.11DUF1777121944.10E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12846SNRNP27 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008380Biological ProcessRNA splicing

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.480
SRR2545915Juvenile tuber24.930
SRP108465SRR5643513five period of Gastrodia elata25.650
SRR5643514five period of Gastrodia elata21.080
SRR5643515five period of Gastrodia elata21.040
SRR5643524five period of Gastrodia elata19.730
SRR5643525five period of Gastrodia elata29.150
SRR5643528five period of Gastrodia elata25.990
SRR5643658five period of Gastrodia elata25.360
SRR5643659five period of Gastrodia elata28.550
SRR5643660five period of Gastrodia elata26.670
SRR5643661five period of Gastrodia elata28.630
SRR5643662five period of Gastrodia elata27.090
SRR5643663five period of Gastrodia elata28.500
SRR5643664five period of Gastrodia elata29.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.210
SRR6049655Rhizomagastrodiae_C368-T10_good_121.100
SRR6049656Rhizomagastrodiae_C368-T07_good_121.970
SRR6049657Rhizomagastrodiae_C368-T07_good_127.600
SRR6049658Rhizomagastrodiae_C368-T04_good_133.150
SRR6049659Rhizomagastrodiae_C368-T04_good_138.660
SRR6049660Rhizomagastrodiae_C368-T01_good_130.550
SRR6049661Rhizomagastrodiae_C368-T04_good_130.210
SRR6049662Rhizomagastrodiae_C368-T01_good_119.210
SRR6049663Rhizomagastrodiae_C368-T01_good_122.280
SRR6049664Rhizomagastrodiae_C368-T10_good_119.060
SRR6049665Rhizomagastrodiae_C368-T10_good_119.060
SRP279888GastroGastrodia elata tuber 40.37
JuvenJuvenile tuber73.02
Mother_GastroMother tuber of Gastrodia elata 18.70
Mother_JuvenMother tuber of Juvenile 45.86