Detail information of GWHGAAEX004236/evm.TU.scaffold_147.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|118577120|ref|YP_876863.1| | 2.00E-12 | small nuclear ribonucleoprotein [Cenarchaeum symbiosum A] |
| KOG | KOG3482 | 3.00E-52 | Small nuclear ribonucleoprotein (snRNP) SMF |
| nr | gi|743811790|ref|XP_010929253.1| | 5.10E-55 | PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SUM2|RUXF_ARATH | 9.00E-53 | Probable small nuclear ribonucleoprotein F |
| trEMBL | tr|M0RKT4|M0RKT4_MUSAM | 7.00E-55 | Small nuclear ribonucleoprotein F {ECO:0000256|PIRNR:PIRNR006609} |
| TAIR | AT4G30220 | 3.00E-52 | small nuclear ribonucleoprotein F |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 954668 | 962753 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004236
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01423.21 | LSM | 11 | 73 | 2.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11098 | SNRPF, SMF | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0000387 | Biological Process | spliceosomal snRNP assembly |
| GO:0005681 | Cellular Component | spliceosomal complex |
| GO:0005732 | Cellular Component | small nucleolar ribonucleoprotein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 90.410 |
| SRR2545915 | Juvenile tuber | 97.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 121.070 |
| SRR5643514 | five period of Gastrodia elata | 149.060 | |
| SRR5643515 | five period of Gastrodia elata | 134.130 | |
| SRR5643524 | five period of Gastrodia elata | 147.350 | |
| SRR5643525 | five period of Gastrodia elata | 120.010 | |
| SRR5643528 | five period of Gastrodia elata | 123.580 | |
| SRR5643658 | five period of Gastrodia elata | 110.000 | |
| SRR5643659 | five period of Gastrodia elata | 123.760 | |
| SRR5643660 | five period of Gastrodia elata | 126.420 | |
| SRR5643661 | five period of Gastrodia elata | 111.680 | |
| SRR5643662 | five period of Gastrodia elata | 108.140 | |
| SRR5643663 | five period of Gastrodia elata | 116.880 | |
| SRR5643664 | five period of Gastrodia elata | 105.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 72.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 93.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 69.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 82.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 72.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 78.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 81.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 87.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 83.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 126.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 126.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 165.47 |
| Juven | Juvenile tuber | 145.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 116.61 | |
| Mother_Juven | Mother tuber of Juvenile | 152.18 |