Detail information of GWHGAAEX004238/evm.TU.scaffold_147.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312136410|ref|YP_004003747.1| | 1.00E-23 | DNA repair and recombination protein rada [Methanothermus fervidus DSM 2088] |
| KOG | KOG1564 | 1.00E-64 | DNA repair protein RHP57 |
| nr | gi|720012392|ref|XP_010259852.1| | 1.05E-85 | PREDICTED: DNA repair protein XRCC3 homolog [Nelumbo nucifera] |
| Swissprot | tr|Q9FKM5|XRCC3_ARATH | 3.00E-65 | DNA repair protein XRCC3 homolog |
| trEMBL | tr|M0U021|M0U021_MUSAM | 7.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P13630_001} |
| TAIR | AT5G57450 | 1.00E-64 | homolog of X-ray repair cross complementing 3 (XRCC3) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 981996 | 984614 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004238
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08423.10 | Rad51 | 15 | 262 | 1.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10880 | XRCC3 | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.320 |
| SRR2545915 | Juvenile tuber | 6.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.480 |
| SRR5643514 | five period of Gastrodia elata | 14.240 | |
| SRR5643515 | five period of Gastrodia elata | 12.770 | |
| SRR5643524 | five period of Gastrodia elata | 12.410 | |
| SRR5643525 | five period of Gastrodia elata | 16.540 | |
| SRR5643528 | five period of Gastrodia elata | 14.040 | |
| SRR5643658 | five period of Gastrodia elata | 13.080 | |
| SRR5643659 | five period of Gastrodia elata | 12.020 | |
| SRR5643660 | five period of Gastrodia elata | 14.450 | |
| SRR5643661 | five period of Gastrodia elata | 19.000 | |
| SRR5643662 | five period of Gastrodia elata | 19.150 | |
| SRR5643663 | five period of Gastrodia elata | 15.680 | |
| SRR5643664 | five period of Gastrodia elata | 14.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.98 |
| Juven | Juvenile tuber | 23.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.26 | |
| Mother_Juven | Mother tuber of Juvenile | 18.43 |