Gene detail

Detail information of GWHGAAEX004241/evm.TU.scaffold_147.45

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4640	3.00E-166	Anaphase-promoting complex (APC), subunit 4
nr	gi\|743769001\|ref\|XP_010914780.1\|	0	PREDICTED: anaphase-promoting complex subunit 4 [Elaeis guineensis]
Swissprot	tr\|O65418\|APC4_ARATH	0	Anaphase-promoting complex subunit 4
trEMBL	tr\|A0A061GGW7\|A0A061GGW7_THECC	0	Transducin/WD40 repeat-like superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY28407.1}
TAIR	AT4G21530	3.00E-166	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1089484	1192389	+

Transcript Sequence
>GWHTAAEX004241 GTAATTATCATGCGTTAATAATCTTTCACGTGGATTGAGCCGCCGGTTCCCGTCCTCGACTATACCGCGAAGCCGTCACTGCTGGAGCCATGGCGGAAGAAGAAGTTGAGATGGAGGCCGAAGCGGCATTGCAAGGAGCTTTTCCTTTCCAGCTCCAGTTTGACAAGTCGATTCCTTCTCAGGTTAAGATTGCGGAGTGGAATCCTGAGAAGGATCTCCTCGCTATGGTGACGGAGGATAACAGGATTCTTCTCCATCGATTTAATTGGCAGAGACTTTGGTCTTATTCCCCAGGGAAAAGCATTACATCTATTTGCTGGCGTCCTGATGGGAAGGCTATAGCTCTTGGTCTTGATGATGGAAACATTTTGTTGCATGATGTTGAGAATGGTAAGCTATTGAGAGCTGTTAAATCTCATAGTGTTGCTGTTATCTGCCTTAACTGGGAGGAAGCTGCTCAAATCAAGGATGAAAATAACTTATATTCATATGAAGATCGCACTCTGCGGTTCTTTCCACCCTCTCCCCGAATTCCTCGAATGCATGGATTAGGTTCAGGAGACAGTGGATTCTCAGATAATTCTGAGGATTCATTTCAAGAGCTTTCTAATTATTCTTATCAGCGTTTCAACGTTCTATGCAGTGCAGATAAGGATGGCTGCATTTGCTTTAGTGTATTTGGAATTTTTCAGATGGGGAAGATCAACATTCAGAATGTGCCTATTTCAAGGCCTTCATTAGGTGATAACATGAATTTGAAGCTGCGTAATGCTTCCATACAAAAGGTGGCTCTATCAAAAACTCTTTCTCAGTTGATTGTACTCTGTTCTGGAGAGCTGGCCGAGGAAGCCAATCAGCCACATGACGATGGACATGTTCTTAAGGATTATGTATTTATCAAAGCGGATGGATCATGTTCCAGTTTTGGCTCGACTGGTCTGCATTGCGTGCTTCTGAATACTTCTATGTTTTCCAATCGAAAGAATGAGCTCCATCAAGTTGCCCAACAAGCTTCAAATATCGATCATTTAGTTGAGGTCATTCGAGAGTCCCTATCGCTGATGTCAAAGCAATGGTCTTATGCAATGAATTCCTTTAATGAGAAGTTTAGCCTACTTTCTTCTTTGATTGTCAGTCATGGTGGTTTAGATTTGAATCCTCAAGATGAGTTCTTAAGCCTTCTATTTGGAACTCGTACGAGTCCTGCACTTCAGCAATTTCTAGTGAACTCACTAGGTGAAGCGGGTTTAAAACGTGTGTCCAAAACTGTTCATGAAGCTGGGAAGGAGCTTCTTGTCATCATTCATGAACATCTTCAGCCTTCTGTGGAGATTATTGGATTCAGAGTTGGCGAACTGAGAGGCCTTACAAGATGGCATGATCGGTTCCAGAATATTGGACTTGATGAAAGGCTTATTGAAAACGCAACAGAAAAAACTGGAATGCTGCTTGTACAGGTTGAAAGGTTTGCAAGGGTTTTTTTAGCAGTGCTCCACCTGTTTCAAAATTTCTTCAATTGGATATTAAAATGTATAAAGATACTTCTGCCTGAACCAGCTGATCAAATCCAACAATCCAATAGCGAACTTGTTGTCCTATTCCTAAAGTTTATTTTTGATCAAGATCCTGTTGGACAGTTTCTGGATATTTCTAATGGCAACCATAGCACTGTTGCTAATCCTGACACAACAAAACTGATAGAAGAACTTGTGGCATTTGGAGGGTTTTCAGACACTGAATTTTTAGATAGAACTTTATCGGTGGAATTTGATCAATTGGTGCAATGCTTTAAGGAGGCCTTCTTGATGCCATTTACTACCATGTCCAAGAAGATATGCACTCTGGACTTTCTGCCACTATATCCTTCCCCTGCATCTGCAAGTTCAGCCTTGCACATTCCTACGTCAATATATTGCTACAAGGGTGATTTTGGTGATGTATTTAACTACGAAAATTCTCAAACCTGCCTTTTGGATTATATATGTTTTAAAATACCGGAGGAATCATTAGATATGGCGAATTGCATTGGCATACTGAAAGGTTTATCATACAACTCAAGCTCTTGTGGGAAAGGGTCAGCAACCTTGGCAGCTGTTTTATTACGCATACCTGAAGGGTACCGGTGTGTTGATCTTTCTTTATATAAGGAAAACCAGCTTATTTTATTACTGAGCGGGTCAACATCTCCTGAGAATTCTGAGCAATCTTGGGTGATGATGCTTCAAATGAGCAGTCTACCCTTTGTAACTATTTCAAGATCAGTATTAGGAAATCTCTGGAACCTCAATGAATTAAAGAGTTCTGCTGTAGAATTAAGCTTAAGAACGGGTAGAGTCCGTTGCATTCCTCACATGGTGACCACCCCTTTGGCTGTGAGTGCGTCGAGAGGTGTGGCTTCAATCTTCACTGCACGGAAGCATGCAATGGTTTTTATCCTGGATGAGGATGAAGACGAGGCTTCTGATGTTATGGAATAATCGCATTTCTCAAAAAATGAGCCCAAAGAGTATTCAGATACCGCAGAGTGCATGATTTGTGTATTCTGATAATGGAATTTATCAAGCCAAAATATCTGCTCTGTTAGTAAAAATTATATTTAATAAAGTTAAATTTTTTTATTGTCTCTCTATGCTTAATGTAATGATGTTAATGATTATTTGATCACCATATTAAATTGGTATGTAAAATTAATGTAGAGATTAACAACAATTTGAGCTGCTGGTGCTATTGCTGCTACATGCGTCATGCATGGATTAGGAAGGGTTTTGAAACTCTATTGAAAAGCGTGGGTATCTGAGGCTGTATTACAAGTTTCAGTTTAAGGATTGATTTATTTGACAAGCTATAAAATTA

Network for GWHGAAEX004241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.6	ANAPC4_WD40	36	121	8.50E-27
PF12896.6	ANAPC4	285	485	1.30E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03351	APC4	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.610
SRP064423	SRR2545915	Juvenile tuber	9.390
SRP108465	SRR5643513	five period of Gastrodia elata	8.520
	SRR5643514	five period of Gastrodia elata	9.560
	SRR5643515	five period of Gastrodia elata	8.510
	SRR5643524	five period of Gastrodia elata	10.250
	SRR5643525	five period of Gastrodia elata	3.320
	SRR5643528	five period of Gastrodia elata	3.220
	SRR5643658	five period of Gastrodia elata	2.140
	SRR5643659	five period of Gastrodia elata	8.470
	SRR5643660	five period of Gastrodia elata	8.440
	SRR5643661	five period of Gastrodia elata	8.120
	SRR5643662	five period of Gastrodia elata	7.840
	SRR5643663	five period of Gastrodia elata	8.990
	SRR5643664	five period of Gastrodia elata	9.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.650
SRP279888	Gastro	Gastrodia elata tuber	17.84
	Juven	Juvenile tuber	19.85
	Mother_Gastro	Mother tuber of Gastrodia elata	9.78
	Mother_Juven	Mother tuber of Juvenile	15.42