Detail information of GWHGAAEX004245/evm.TU.scaffold_147.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24060MADS box transcription factor
nrgi|743845590|ref|XP_010938622.1|0PREDICTED: protein SGT1 homolog At5g65490 isoform X2 [Elaeis guineensis]
Swissprottr|Q9LSM5|SGT1_ARATH0Protein SGT1 homolog At5g65490
trEMBLtr|M1BBM1|M1BBM1_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400041612}
TAIRAT5G654900Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015012922141318234+
Transcript Sequence

Network for GWHGAAEX004245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07093.10SGT1216121.10E-173
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.120
SRR2545915Juvenile tuber17.090
SRP108465SRR5643513five period of Gastrodia elata9.540
SRR5643514five period of Gastrodia elata8.390
SRR5643515five period of Gastrodia elata15.460
SRR5643524five period of Gastrodia elata9.680
SRR5643525five period of Gastrodia elata13.570
SRR5643528five period of Gastrodia elata12.440
SRR5643658five period of Gastrodia elata10.360
SRR5643659five period of Gastrodia elata14.090
SRR5643660five period of Gastrodia elata7.470
SRR5643661five period of Gastrodia elata12.060
SRR5643662five period of Gastrodia elata11.040
SRR5643663five period of Gastrodia elata11.040
SRR5643664five period of Gastrodia elata13.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.860
SRR6049655Rhizomagastrodiae_C368-T10_good_116.440
SRR6049656Rhizomagastrodiae_C368-T07_good_112.320
SRR6049657Rhizomagastrodiae_C368-T07_good_113.990
SRR6049658Rhizomagastrodiae_C368-T04_good_115.320
SRR6049659Rhizomagastrodiae_C368-T04_good_118.300
SRR6049660Rhizomagastrodiae_C368-T01_good_116.040
SRR6049661Rhizomagastrodiae_C368-T04_good_116.600
SRR6049662Rhizomagastrodiae_C368-T01_good_117.060
SRR6049663Rhizomagastrodiae_C368-T01_good_116.480
SRR6049664Rhizomagastrodiae_C368-T10_good_112.450
SRR6049665Rhizomagastrodiae_C368-T10_good_112.450
SRP279888GastroGastrodia elata tuber 15.13
JuvenJuvenile tuber17.54
Mother_GastroMother tuber of Gastrodia elata 20.88
Mother_JuvenMother tuber of Juvenile 54.44