Detail information of GWHGAAEX004246/evm.TU.scaffold_147.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-60 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672176556|ref|XP_008808346.1| | 0 | PREDICTED: receptor-like protein kinase isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P93194|RPK1_IPONI | 0 | Receptor-like protein kinase (Precursor) |
| trEMBL | tr|J3MTG4|J3MTG4_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G23940.1} |
| TAIR | AT1G73080 | 0 | PEP1 receptor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1357645 | 1362736 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004246
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 22 | 59 | 8.80E-07 |
| PF00560.32 | LRR_1 | 111 | 133 | 0.073 |
| PF13855.5 | LRR_8 | 158 | 218 | 3.60E-07 |
| PF13855.5 | LRR_8 | 423 | 482 | 2.90E-08 |
| PF00069.24 | Pkinase | 810 | 1081 | 9.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.800 |
| SRR2545915 | Juvenile tuber | 1.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.150 |
| SRR5643514 | five period of Gastrodia elata | 1.320 | |
| SRR5643515 | five period of Gastrodia elata | 2.320 | |
| SRR5643524 | five period of Gastrodia elata | 1.690 | |
| SRR5643525 | five period of Gastrodia elata | 0.300 | |
| SRR5643528 | five period of Gastrodia elata | 0.570 | |
| SRR5643658 | five period of Gastrodia elata | 0.180 | |
| SRR5643659 | five period of Gastrodia elata | 1.050 | |
| SRR5643660 | five period of Gastrodia elata | 0.610 | |
| SRR5643661 | five period of Gastrodia elata | 1.090 | |
| SRR5643662 | five period of Gastrodia elata | 0.940 | |
| SRR5643663 | five period of Gastrodia elata | 0.780 | |
| SRR5643664 | five period of Gastrodia elata | 0.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.46 |
| Juven | Juvenile tuber | 0.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.56 | |
| Mother_Juven | Mother tuber of Juvenile | 2.75 |