Detail information of GWHGAAEX004248/evm.TU.scaffold_147.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 8.00E-59 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672176556|ref|XP_008808346.1| | 0 | PREDICTED: receptor-like protein kinase isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P93194|RPK1_IPONI | 0 | Receptor-like protein kinase (Precursor) |
| trEMBL | tr|W1PHS2|W1PHS2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN07239.1} |
| TAIR | AT1G73080 | 0 | PEP1 receptor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1404884 | 1408018 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004248
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 23 | 62 | 1.80E-06 |
| PF00560.32 | LRR_1 | 114 | 136 | 0.028 |
| PF13855.5 | LRR_8 | 162 | 221 | 7.90E-07 |
| PF13855.5 | LRR_8 | 427 | 485 | 1.80E-06 |
| PF13855.5 | LRR_8 | 646 | 700 | 9.40E-07 |
| PF00069.24 | Pkinase | 814 | 987 | 2.90E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.820 |
| SRR2545915 | Juvenile tuber | 9.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.440 |
| SRR5643514 | five period of Gastrodia elata | 3.780 | |
| SRR5643515 | five period of Gastrodia elata | 4.470 | |
| SRR5643524 | five period of Gastrodia elata | 3.880 | |
| SRR5643525 | five period of Gastrodia elata | 2.980 | |
| SRR5643528 | five period of Gastrodia elata | 2.720 | |
| SRR5643658 | five period of Gastrodia elata | 3.320 | |
| SRR5643659 | five period of Gastrodia elata | 3.530 | |
| SRR5643660 | five period of Gastrodia elata | 3.110 | |
| SRR5643661 | five period of Gastrodia elata | 3.150 | |
| SRR5643662 | five period of Gastrodia elata | 3.980 | |
| SRR5643663 | five period of Gastrodia elata | 2.660 | |
| SRR5643664 | five period of Gastrodia elata | 2.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.41 |
| Juven | Juvenile tuber | 2.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.52 | |
| Mother_Juven | Mother tuber of Juvenile | 2.43 |