Gene detail

Detail information of GWHGAAEX004250/evm.TU.scaffold_147.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|56698159\|ref\|YP_168531.1\|	4.00E-15	glutamine ABC transporter, periplasmic glutamine-binding protein [Ruegeria pomeroyi DSS-3]
KOG	KOG1052	0	Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
nr	gi\|743768051\|ref\|XP_010914299.1\|	0	PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
Swissprot	tr\|Q9C5V5\|GLR28_ARATH	0	Glutamate receptor 2.8 (Precursor)
trEMBL	tr\|A0A061GIM7\|A0A061GIM7_THECC	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}
TAIR	AT2G29110	0	glutamate receptor 2.8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1421185	1428276	+

Transcript Sequence
>GWHTAAEX004250 ATTTTTATATAAGTATAGAATAAGAACAGCAGATTACAAGCAGACGAGGCGGAGAGAAAGAATCTCCTCCATCTTGCCCCAGTTCGATGAAAACCCTAATCCGCTTTCTTCTCCTCCTCCTTTCATCATCCGCCGGCGTCACCATCTCCGGCGAATCCCCGGCAAAAACAGTAAAAGTTGGCGTGATAGTGGACCTAAGCACGGCGGTCGGGCGCGGCGCCCTAGCCGCAATGTCTCTCTCCCTCTCCGATTTCTACTCAGAGCACCCGTCGTCCGCTGCCCGAGTCGTCCTCCTTCCCCGCAACGCCTCCGGCTCCGACGCCATCGGCGCGGCGTCCATCGCCTTCGATCTCATCTCCAACCACCAGGTCTCCGCCATTATCGGCCCCCAGACCTCGTCCACGGCCGCATTCGTGGCGGATCTTGGCTCCCGCGCTCAGATCCCAGTCGTCTCCTTCTCCGCAACCTCTCCTTTGCTCTCCCCTTCCCTGTCCCCTTTCTTCATCCGCGCAGTCCCCTCCGACTCCGGCATGGGCCCTTCCATCGCCGCCATCGCCTCCGCTTTCTCATGGCGCCGCATCGTTCCCATCCACGAGGACACCGATTTCGGATCATCCCTTCTTCCGAGCCTCCTGGAGGCCCTCTCCTCCTCAGACATCTCCATTCCCTACCGCTGCGCCATCCCCCCCTCCGCCTCCGCCGATCTGATCGGCAAAGAACTCTACCGCCTCAAAACCCTCCAGACCCGCGTCTTTGTCCTCCACGCCAACTCCTCCCTCTCCGCCCGCATCCTCTCCGCCGCTTCGCAGTCCGGCATGGTTCAAAGAGACTACGCATGGATCCTCTCCTCCGCTGTCACCGCCCAGATCGGATCCATCGATCTTGCCTCCATCCAGGGGGGCATCGGAGTCCGCCCATTCATCAATCGAGCAGATCCCGCCGTCCGGGACTTCGAGATTCGCTGGAGGGTCGAGTACCTGAGGCAGAACCCTAATTTGACCTCCGAGGCCGTCTATAGCGGAACCATCAGCCCTTACGTCTACTACGCCTACGACGCCCTCTGGGCCGTTGCCAAGGCCGCCAATGCTGCTTCCGGAACCCTGATCTCAGAGATTCAGAGGGCGGAGTTCGACGGAATCAGCGGGCGGTTCCGGCTTGAAGACGGGGAGCTGAGGGTAGCGGCCTACCAGATCGTGAACGTAAACGGCGAGGCGGTGCGCGGGATCGGTTTCTGGACGGCGGAGAGAGGCCTGGCCAAGAGGCTGGAGGGCGACGGAGAGGCCGAGTACTCAAAAAGTAGGGAGGATCTGGGCCCGGTGATATGGCCGGGGGAGACGGCGGCGCCTCCCAAGGGATGGGAGGCGCCCACGGGAGAGCGGAAGGTGAGGTTCGCGGTGCCGGGGCCGGTGGAGCCGGGATTCCGCCCGTTTCTTAGCATGGATGTGGACCCGGCGACCGGCAAGGTTGTCGCCGGAGGGTACGTGATCGACGTCTTTGAAGCGGCCGTGCGCCGCCTGCCCTACGCCTTGTCGTTCGAATACGTGCCGCCGCCAGTGACCGGTGGGAGTAAGGCCGCCACCGATTACGATGCCCTCGTGAAGGCCGTCTTCCACCAGGAGGTGGACGGGGTGGTGGGGGACGTGACGATAACGGCGAACCGGTCGGAGTATGCGGCGTTCACATTCCCTTACACGGTGTCAGGGGTTTCCATGCTAGTTCCCGTGCGGAACGTCCGCAGCCACCGCGCATGGGCCTTCCTGAAGCCCCTCACCTCCGACCTCTGGCTGATCAGCGCCTCCTTCTTCTTCCTCACCGGCCTCGTCGTCTGGTTCCTCGAACACCGCATCAACGATGACTTCCGCGGCCCCCCCTCCTATCAGCTCGGCACCGTCTTCTTCTTCTCCTTCTCCTCCCTCGTCTTCGCCCACAAAGAGGAGATCCTGAGCAACCTGTCGAAGCTGGTGATGACTGTGTGGGTCTTCGTGGTGCTGATCCTGACGTCGAGCTACACAGCGAGCCTGACCTCGATGCTGACGGTGCAGCAGTTCAAACCGGCGATCTCCGACAACTTGCATGAGCTGATATTGCGGGGGGACCCGGTGGGGCACCTCCGCCACTCCTTCGTGAAAGGCCTTCTCCTCAAGCTGGGGTTCCACGAGAAGCAGCTCTACGGGTACAAGTCTCCGGAGGAGTACCGGGAGGCGCTCTCCAACGGCTCTGTCGTCGCCATCATCGACGAGATCCCCTACCTCAAGCTCTTCCTCAAGTCCTTCTGCGACAACTTCACCATGAGCAGCCCTCTCTACAAGACCTCCGGCTTTGGGTTCGTGTTCCCCAGAGGCTCCTCCCTCATTCCCGATCTCTCGAGGGCCATTTTGAGCCTCACGGAGAGCGACGAGATGGAGGAGATCGGGAGGCGTTGGTTCGGGGACCTCTCCTCCTGCCCAGCGGGCCATGGCAGCGACGGCGGTGGCTCCATCTCCGCCTCCAACAGCCTTGACTTCGGCAGCTTCTACGGCCTCTTCCTCATCACTGGTGCAGCCTCCGCCCTCGCCCTCGTCGCCTACTCCGTCTCCTTCTGCTTCCGCCACCGTGCCGACCTGGCTGCCGTCTTCGCCGCCAAGATGACCTTCGGGAGGAGGCTCAGGTCTGTCGCCAGGTTCTACGATGGCAAGGACCTCTCCTGCCACGCCTTCAAGGATTCTTCCGGCAAGACGGGTGCCTCCGCCGGCCAAGGAAAATCACCTCGCTTCGACTCGGACAAGTTTAGGAGCCCGTTCAGCGTCTCGCAGCTGGGAACTGACGCCCCGTCGTCGCCGGAGTCTGGGAGTCCGCTTTCCGCGAGCAGTTTTCTGTCGGATGCCCGCCGCGGCGGCGCCGATAACGGTGTCGCCAGATTGAGGCACCAAGGGGAGTGGTAACACAGGTTGAGGCTGCACTATGTGCCTCAAACGCATCTGAAACCCATATTTTCTTCCCTGTGCATAATATTTGTTTGCCCATATTCATTCGTGTCAAATATGTGAGATTTATGCGAAGAACAGGAGAAAGAATGTTCGACGAAATAACTCCTAAAAAAAGTTCTGGCGAGATCTGATTCTTTCCTCAGTCTCTCTCAGGTACTAAGATGATGAAATCAAGACGGCTCTCTGCAGAGAAAAAAGAACAGGAGCAAAAACGAAACACAATCACAGTTCACAGAACAAATAAACGAAGAACATCAATGTGCGTTGAATACTTGAAATCGTGAAAATCCCACACCACACCAAAATAACTTGGAAGACTATGGCGACTACCAGAAATCACGCCTTGTACAATCCTAGTCTTAACAGGACTATTTAAGGCTAGTGTGATAGCAACGAAAACAGCCCTAGCTCTATCGACGAAAACGGAGGATTGGTCGACAGTGTATCCCGGGCTGATCAATCAGGCTTTACAAAATAACATATATTACACTGGTGGATCCACAGCTCTTATCAAACGGTAACGACAATGCCAAGTGAGCCAATCACAGGAGGACACGCGGCGAGTTAACTGGAGATGGACATGCGGCGAGTTTAATGATGATAGCTTTCATCCGAACGTTGACTGTGGCACCACATCATTTAATCGTTGAGTTTTAAAAGTCAAATCTTTTAAACCAAGAAAATTTTGAAGGTTTCGTACCGAGTTAGCCAATAGGAGACCTTCCACTTGATTGAGATTGAAAGGAAGCAACATGGCGATGAAAAATGGTATATATTTAAAAAAATATTTAGAATAAATAGAAAATTTTTATTTTTTATTATTTTTTGCATATAAACTTCTC

Network for GWHGAAEX004250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01094.27	ANF_receptor	46	374	1.60E-49
PF00497.19	SBP_bac_3	457	781	6.60E-20
PF00060.25	Lig_chan	563	819	8.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0015276	Molecular Function	ligand-gated ion channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.340
SRP064423	SRR2545915	Juvenile tuber	16.030
SRP108465	SRR5643513	five period of Gastrodia elata	46.060
	SRR5643514	five period of Gastrodia elata	30.890
	SRR5643515	five period of Gastrodia elata	42.290
	SRR5643524	five period of Gastrodia elata	44.370
	SRR5643525	five period of Gastrodia elata	40.010
	SRR5643528	five period of Gastrodia elata	44.060
	SRR5643658	five period of Gastrodia elata	30.850
	SRR5643659	five period of Gastrodia elata	28.570
	SRR5643660	five period of Gastrodia elata	29.340
	SRR5643661	five period of Gastrodia elata	37.430
	SRR5643662	five period of Gastrodia elata	35.680
	SRR5643663	five period of Gastrodia elata	29.720
	SRR5643664	five period of Gastrodia elata	29.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.300
SRP279888	Gastro	Gastrodia elata tuber	27.43
	Juven	Juvenile tuber	38.25
	Mother_Gastro	Mother tuber of Gastrodia elata	85.12
	Mother_Juven	Mother tuber of Juvenile	127.35