Detail information of GWHGAAEX004251/evm.TU.scaffold_147.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-148 | FOG: PPR repeat |
| nr | gi|672116355|ref|XP_008781337.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9SAD9|PPR40_ARATH | 8.00E-149 | Pentatricopeptide repeat-containing protein At1g13040, mitochondrial (Precursor) |
| trEMBL | tr|Q7XIR4|Q7XIR4_ORYSJ | 0 | cDNA clone:J033055B02, full insert sequence {ECO:0000313|EMBL:BAG95163.1} |
| TAIR | AT1G13040 | 3.00E-148 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1428895 | 1435890 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004251
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 197 | 226 | 1.60E-05 |
| PF13041.5 | PPR_2 | 233 | 277 | 5.60E-08 |
| PF01535.19 | PPR | 302 | 330 | 0.0056 |
| PF13041.5 | PPR_2 | 333 | 382 | 2.10E-15 |
| PF12854.6 | PPR_1 | 399 | 430 | 2.60E-08 |
| PF13041.5 | PPR_2 | 438 | 486 | 4.10E-15 |
| PF13041.5 | PPR_2 | 508 | 554 | 3.90E-13 |
| PF13041.5 | PPR_2 | 577 | 625 | 2.30E-13 |
| PF01535.19 | PPR | 651 | 680 | 0.8 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.090 |
| SRR2545915 | Juvenile tuber | 1.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.300 |
| SRR5643514 | five period of Gastrodia elata | 2.460 | |
| SRR5643515 | five period of Gastrodia elata | 2.070 | |
| SRR5643524 | five period of Gastrodia elata | 3.070 | |
| SRR5643525 | five period of Gastrodia elata | 1.650 | |
| SRR5643528 | five period of Gastrodia elata | 1.360 | |
| SRR5643658 | five period of Gastrodia elata | 1.270 | |
| SRR5643659 | five period of Gastrodia elata | 2.210 | |
| SRR5643660 | five period of Gastrodia elata | 2.240 | |
| SRR5643661 | five period of Gastrodia elata | 2.370 | |
| SRR5643662 | five period of Gastrodia elata | 2.220 | |
| SRR5643663 | five period of Gastrodia elata | 2.120 | |
| SRR5643664 | five period of Gastrodia elata | 1.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.53 |
| Juven | Juvenile tuber | 2.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.37 | |
| Mother_Juven | Mother tuber of Juvenile | 2.79 |