Detail information of GWHGAAEX004252/evm.TU.scaffold_147.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0946 | 0 | ER-Golgi vesicle-tethering protein p115 |
| nr | gi|743863070|ref|XP_010943706.1| | 0 | PREDICTED: golgin candidate 6 [Elaeis guineensis] |
| Swissprot | tr|B0F9L4|GOGC6_ARATH | 0 | Golgin candidate 6 |
| trEMBL | tr|A0A067LNG8|A0A067LNG8_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP46400.1} |
| TAIR | AT3G27530 | 0 | golgin candidate 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1457773 | 1488923 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004252
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04869.13 | Uso1_p115_head | 365 | 675 | 6.80E-21 |
| PF04871.12 | Uso1_p115_C | 781 | 904 | 1.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048280 | Biological Process | vesicle fusion with Golgi apparatus |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0000139 | Cellular Component | Golgi membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.970 |
| SRR2545915 | Juvenile tuber | 29.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.550 |
| SRR5643514 | five period of Gastrodia elata | 33.420 | |
| SRR5643515 | five period of Gastrodia elata | 28.690 | |
| SRR5643524 | five period of Gastrodia elata | 33.810 | |
| SRR5643525 | five period of Gastrodia elata | 30.360 | |
| SRR5643528 | five period of Gastrodia elata | 32.420 | |
| SRR5643658 | five period of Gastrodia elata | 34.490 | |
| SRR5643659 | five period of Gastrodia elata | 23.160 | |
| SRR5643660 | five period of Gastrodia elata | 27.030 | |
| SRR5643661 | five period of Gastrodia elata | 26.310 | |
| SRR5643662 | five period of Gastrodia elata | 25.280 | |
| SRR5643663 | five period of Gastrodia elata | 26.460 | |
| SRR5643664 | five period of Gastrodia elata | 27.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.40 |
| Juven | Juvenile tuber | 31.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.51 | |
| Mother_Juven | Mother tuber of Juvenile | 47.44 |