Detail information of GWHGAAEX004254/evm.TU.scaffold_147.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-166 | FOG: PPR repeat |
| nr | gi|743789465|ref|XP_010922911.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Elaeis guineensis] |
| Swissprot | tr|Q9FI80|PP425_ARATH | 2.00E-166 | Pentatricopeptide repeat-containing protein At5g48910 |
| trEMBL | tr|F6HL02|F6HL02_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55140.1} |
| TAIR | AT5G48910 | 8.00E-166 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1491459 | 1508473 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004254
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 181 | 230 | 6.50E-13 |
| PF01535.19 | PPR | 254 | 282 | 0.00018 |
| PF13041.5 | PPR_2 | 283 | 330 | 1.50E-10 |
| PF01535.19 | PPR | 356 | 380 | 0.0063 |
| PF14432.5 | DYW_deaminase | 455 | 578 | 1.00E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.140 |
| SRR2545915 | Juvenile tuber | 1.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.810 |
| SRR5643514 | five period of Gastrodia elata | 2.920 | |
| SRR5643515 | five period of Gastrodia elata | 2.590 | |
| SRR5643524 | five period of Gastrodia elata | 2.800 | |
| SRR5643525 | five period of Gastrodia elata | 1.290 | |
| SRR5643528 | five period of Gastrodia elata | 0.860 | |
| SRR5643658 | five period of Gastrodia elata | 0.860 | |
| SRR5643659 | five period of Gastrodia elata | 2.450 | |
| SRR5643660 | five period of Gastrodia elata | 2.500 | |
| SRR5643661 | five period of Gastrodia elata | 3.550 | |
| SRR5643662 | five period of Gastrodia elata | 2.180 | |
| SRR5643663 | five period of Gastrodia elata | 2.670 | |
| SRR5643664 | five period of Gastrodia elata | 2.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.15 |
| Juven | Juvenile tuber | 5.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.92 | |
| Mother_Juven | Mother tuber of Juvenile | 2.16 |