Detail information of GWHGAAEX004258/evm.TU.scaffold_147.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392383010|ref|YP_005032207.1|8.00E-6750S ribosomal subunit protein L4 [Azospirillum brasilense Sp245]
KOGKOG16241.00E-137Mitochondrial/chloroplast ribosomal protein L4
nrgi|743767644|ref|XP_010914092.1|1.87E-156PREDICTED: 39S ribosomal protein L4, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|P51313|RK4_PORPU3.00E-3050S ribosomal protein L4, chloroplastic
trEMBLtr|M0TIY9|M0TIY9_MUSAM3.00E-152Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P19520_001}
TAIRAT2G200601.00E-137Ribosomal protein L4/L1 family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015015433771587398-
Transcript Sequence

Network for GWHGAAEX004258

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00573.21Ribosomal_L4992841.60E-64
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02926RP-L4, MRPL4, rplD Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.800
SRR2545915Juvenile tuber29.270
SRP108465SRR5643513five period of Gastrodia elata36.660
SRR5643514five period of Gastrodia elata30.740
SRR5643515five period of Gastrodia elata31.120
SRR5643524five period of Gastrodia elata30.260
SRR5643525five period of Gastrodia elata35.230
SRR5643528five period of Gastrodia elata34.220
SRR5643658five period of Gastrodia elata34.420
SRR5643659five period of Gastrodia elata37.920
SRR5643660five period of Gastrodia elata38.580
SRR5643661five period of Gastrodia elata36.880
SRR5643662five period of Gastrodia elata42.110
SRR5643663five period of Gastrodia elata45.850
SRR5643664five period of Gastrodia elata39.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.050
SRR6049655Rhizomagastrodiae_C368-T10_good_144.710
SRR6049656Rhizomagastrodiae_C368-T07_good_146.400
SRR6049657Rhizomagastrodiae_C368-T07_good_153.080
SRR6049658Rhizomagastrodiae_C368-T04_good_148.130
SRR6049659Rhizomagastrodiae_C368-T04_good_148.630
SRR6049660Rhizomagastrodiae_C368-T01_good_145.170
SRR6049661Rhizomagastrodiae_C368-T04_good_145.310
SRR6049662Rhizomagastrodiae_C368-T01_good_139.120
SRR6049663Rhizomagastrodiae_C368-T01_good_138.510
SRR6049664Rhizomagastrodiae_C368-T10_good_143.590
SRR6049665Rhizomagastrodiae_C368-T10_good_143.590
SRP279888GastroGastrodia elata tuber 48.33
JuvenJuvenile tuber39.75
Mother_GastroMother tuber of Gastrodia elata 36.29
Mother_JuvenMother tuber of Juvenile 35.91