Detail information of GWHGAAEX004260/evm.TU.scaffold_147.65_evm.TU.scaffold_147.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108805455|ref|YP_645392.1| | 2.00E-32 | multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] |
| KOG | KOG0519 | 3.00E-160 | Sensory transduction histidine kinase |
| nr | gi|743789858|ref|XP_010923021.1| | 0 | PREDICTED: histidine kinase CKI1-like [Elaeis guineensis] |
| Swissprot | tr|O22267|CKI1_ARATH | 8.00E-161 | Histidine kinase CKI1 |
| trEMBL | tr|M0SH08|M0SH08_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22920_001} |
| TAIR | AT2G47430 | 3.00E-160 | Signal transduction histidine kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1639728 | 1657697 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004260
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00512.24 | HisKA | 390 | 453 | 3.30E-07 |
| PF02518.25 | HATPase_c | 503 | 660 | 8.90E-23 |
| PF00072.23 | Response_reg | 929 | 1056 | 2.90E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0016310 | Biological Process | phosphorylation |
| GO:0016772 | Molecular Function | transferase activity, transferring phosphorus-containing groups |
| GO:0000155 | Molecular Function | phosphorelay sensor kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.610 |
| SRR2545915 | Juvenile tuber | 4.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.950 |
| SRR5643514 | five period of Gastrodia elata | 2.350 | |
| SRR5643515 | five period of Gastrodia elata | 2.190 | |
| SRR5643524 | five period of Gastrodia elata | 2.110 | |
| SRR5643525 | five period of Gastrodia elata | 0.810 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 0.260 | |
| SRR5643659 | five period of Gastrodia elata | 3.000 | |
| SRR5643660 | five period of Gastrodia elata | 4.150 | |
| SRR5643661 | five period of Gastrodia elata | 3.110 | |
| SRR5643662 | five period of Gastrodia elata | 3.940 | |
| SRR5643663 | five period of Gastrodia elata | 4.260 | |
| SRR5643664 | five period of Gastrodia elata | 3.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.45 |
| Juven | Juvenile tuber | 6.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.73 | |
| Mother_Juven | Mother tuber of Juvenile | 3.01 |