Gene detail

Detail information of GWHGAAEX004261/evm.TU.scaffold_147.67

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2395	Protein involved in vacuole import and degradation
nr	gi\|672141178\|ref\|XP_008794409.1\|	PREDICTED: protein CYPRO4-like [Phoenix dactylifera]
Swissprot	tr\|P40781\|CYPR4_CYNCA	Protein CYPRO4
trEMBL	tr\|M0SVQ3\|M0SVQ3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P04740_001}
TAIR	AT3G19240	Vacuolar import/degradation, Vid27-related protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1660497	1677789	+

Transcript Sequence
>GWHTAAEX004261 ATGGGCGGTTCCCATAGTCGCGAGGGTTTGGAGCTTTCCGATTCCGACACCGGTTCCGATCGATCGGAATCGGAAGATGAACAGGGATCTCTGGCGCCGAGCAACACTTCCGCCGGCTGTTTCCCGGACGGAACACCTAATCCAGTCACCTCCGCCTCTCTCGACGAGGTTGACTCCAGGCTTCAGTCTCTCAAGCTCAAGTACTCTAATTCCCCATCATCGACCACTCCATCCAAAAACCCTAACATCAAGAACGCCGTGAAGCTCTACCTCCACATAGGCGGCAGCCTGCCTTCTGCAAAGTGGATTGTATCCGAGAAATTGGCCACTTATTCCTTCTTCAAGCCTTCCTCCTACGCCTCTTACTACGATGAAAATTTGGATGCTGAGCACGAGGAAGAGGAGCGCGACTCATCCTCCTCTTCGTCCTCCTCTTCATCTCTTTGGTTCTTAAGGATTGGGTCCAAGGTGCGGGTTAAGGTTGGTTCTGCCATGCAGATGAAGACGTTTCCGGACCAGAAACGCGTTGATTTTATTGCTGATGGGGTATGGGCTGTCAAATTCTTCAGCGAAGAGGCGTACAACGTCTTTCAAAATGAGTACCAGAAGTGCCTGTTCGAGAATGTCTATGGATTTGAGGCCAACGAGGAGAACACGGTCAAGGTTTTTGGCAAGGACTTTATGGCGTGGGCGAAGCCGGATTCTGCTGATGATTCCATTTGGGAGGACGCGGCTGAAGGCTTTGAAGTGCCCTCTGCGCGTTGTGCTCCAGCGAAGTCGAACCAATCTCCGCTTGATGAGTTTGAGGAAGCAGTTGATGAAGGTGGAATACAGAGTCTAGCACTTGGAGCTCTTGACAACAGTTTTCTTGTGGGTGACTCTAGCATCCAGGTAGTAAAGAACTTTAATCACGGAGTTCATGGGAAAGGGATTTCTTTGAAAATTTCCGGTCATGGGGATAGCTACTCCACTCCTAAGAAGGCGCTTTTAATGAGAGGTGAAACCAACATGCTTTTGTTGAATTCAATGAATTTAGAGAAACCTCAAGCTAGAGGAGTTCACCAGCTTGATATTGAAACGGGAAAGATTGTGTCTGAGTGGAAGTTTGAAAAGGATGGAACAGATATTACCATGAGGGACATCACAAATGATAGCAAGGGCTCGCAATTGGATCCCTCAGAATCAACCTTTTTGGGTCTGGATGATAATAGGCTTTGCCAGTGGGATATGAGGGAGCGGAGGGGATTGGTTCAAAATATAGCAAGCTCAATGGAGTCGTCGGTATTGCAGTGGTCACAGGGGCATCAGTTTGCAAGGGGTACAAATTTCCAGTGTTTTGCGACAACTGGTGATGGCTCAATTGCTGTTGGTTCTCTTGATGGCAAGATCCGGCTGTATTCAAAGAGCTCCATGAGAATGGCAAAGACTTCATTTCCTGGGTTTGGATCCCCTATTACTCATGTGGATGTTACTTTTGATGGAAAATGGATTCTTGGCACTACAGATACATATCTGATACTCATATGCACTATTTTTAAGGATAAGGATGGGAAAGAGAAAACTGGTTTTAGTGGAAGAATGGGGAACAGGATTGCTGCCCCGAGATTATTGAAGCTCACTCCACTAGATTCATATTTGGCTGGAAAAACTAAGTTTCAGAAAGGGCAGTTCTCATGGGTGACGGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAATTCAGCGTGATATGGAACTTCGTGCAGGTGAAGAAGAGCGGGCACGAGTGCTACCGTGAGCGGGAGGGACTGAAGAGCTGTTACTGCTACCGCATCGTCCCCAAGGACGAGTCCATCGTCGACAGCCGCTTCATGCATGATAAATTTGCCGGCAGCGGCTCCCCCGACGCTCCCCTCGTCGTCGCCACTCCCATGAAGGCTGATAAAGGTTGGAATTCATCATTGTCTATCTCCGTTTTGACAAAAGAAGAGTTTTTCGGTAACCAATCCCAGATTGTTCATGTTATACATAACAACAAAGGAGAAACTGGGCATCTCATTGCTCGAGGAGAAGAACCTTGGGCGGTTTTAGCCCTTCTAGATGCAATTACCCTAATCTCCTCCTCTCGTTTCTTCTCCATTCCCGTTTCCACCGTCGTCGTCGCGGTCGCTATCTCCGCCGTCGTCGTCACCGCGGTCGCCATCGCCGTCGCCATATCCGCCATCGCCATCGCCATCGCGGTCGCCATCTCCGCCATCGCCATCGCCGTCGCCATCTCCGCCATCGCCATCGCCATCGCCTCCGCCATCGCCATCTCCGTCGTCGTCGCCGTCGCCGTCGCCGTCGCCATCGCCGTCGTCGCCATCACCGTCGTCTCCATCGCATTCGTCGCCATCGTTGTCGTCGCAATCGCCGTCGTAACAGTCGCCGTCGTTACAGTCGATAGTAACAAATCATAG

Network for GWHGAAEX004261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08553.9	VID27	184	594	4.50E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.070
SRP064423	SRR2545915	Juvenile tuber	30.840
SRP108465	SRR5643513	five period of Gastrodia elata	41.650
	SRR5643514	five period of Gastrodia elata	45.390
	SRR5643515	five period of Gastrodia elata	45.500
	SRR5643524	five period of Gastrodia elata	46.030
	SRR5643525	five period of Gastrodia elata	64.120
	SRR5643528	five period of Gastrodia elata	87.620
	SRR5643658	five period of Gastrodia elata	71.150
	SRR5643659	five period of Gastrodia elata	32.380
	SRR5643660	five period of Gastrodia elata	32.580
	SRR5643661	five period of Gastrodia elata	41.250
	SRR5643662	five period of Gastrodia elata	33.500
	SRR5643663	five period of Gastrodia elata	30.790
	SRR5643664	five period of Gastrodia elata	35.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.230
SRP279888	Gastro	Gastrodia elata tuber	33.81
	Juven	Juvenile tuber	59.15
	Mother_Gastro	Mother tuber of Gastrodia elata	38.66
	Mother_Juven	Mother tuber of Juvenile	77.32