Gene detail

Detail information of GWHGAAEX004262/evm.TU.scaffold_147.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337285964\|ref\|YP_004625437.1\|	2.00E-129	alpha,alpha-trehalose-phosphate synthase [Thermodesulfatator indicus DSM 15286]
KOG	KOG1050	0	Trehalose-6-phosphate synthase component TPS1 and related subunits
nr	gi\|672115077\|ref\|XP_008779630.1\|	0	PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Phoenix dactylifera]
Swissprot	tr\|Q9LRA7\|TPS9_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
trEMBL	tr\|M0RKV1\|M0RKV1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P23760_001}
TAIR	AT1G23870	0	trehalose-phosphatase/synthase 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1677849	1685216	+

Transcript Sequence
>GWHTAAEX004262 ATGGATTCAGAATCGGATCATGGTGCAGCCAACCCGGTCTCACCATCTTCGCAGACGCAACGGCGCATCATCGTCACGAATCACCTTCCCGTCCGAGCCTCCCGTCAGCAATCCTCCGGCCATTGGACCTTCTCTTGGGACACCGACGCCCTCTCCTTCCAGCTCCGCTCTGGCCTTCCTTCCTCCTCCCCCATCATCCACATCGGAACTCTCCGCGCCGAGATCGACCCCTCCGTCCAAGAATCCGTCGCGCATCAACTCTTTAACGAGTTTAACTGCGTCCCCGTCTTCCTGCCCCCAGATCTCGACTTCCGATTCTACCACGGTTTCTGCAAACACTATCTCTGGCCTCTCCTCCACTACCTTCTTCCCCTCTCCCCCGCTGCGCTCGGAGGCCTCCGCTTTGACCGCCAGCACTGGCTCGCCTATCTCTCGGCCAACAAGCTCTTTGCAGACCGCGTCATGGAAGTCCTCTCTACCGACGACGACTTCGTCTGGGTGCACGACTACCACCTCCTTCCCCTCCCCAGTTTCCTCCGCAAACGCTTCCCGGGCATAAAGCTCGGTTTCTTCCTCCATTCTCCTTTCCCTTCGTCAGAAATCTTCCGCACTTTGCCCGTCCGAGAAGAGCTCCTCCGCGCCCTTCTGAATGCTGATCTGGTGGGCTTTCATACCTTCGACTACGCCCGCCATTTCCTCTCCTGCTGCTCCCGCCTTCTGGGTCTGGACTACGAGTCCAAACGGGGGTACATTGGTCTAGACTACTACGGCCGGATTGTCACTGTCAAGATTCTCCCAGTTGGGGTCGACATGGGACGGCTCGGGGCGGTGATTTCCTCGCCGGAGACGGAGATCAAGGTTCGTGAATTGATGAGCAAGTTCGAAGATAAGATCTTGTTTCTTGGGTGTGATGATATGGACATATTCAAAGGCATTAGCTTGAAGCTCATGGCAATAGAGCATCTTCTGGAAGAACACCCAAAGCTGCGCGGGCGAGTTGTTCTGGTTCAGATTGCAAACCCTGCGAGAAGCCAGGGAAAGGATGTTCAGGAGGTGCAGGAAGAAGCACGGGCAATCGCAAAGAGGATCAATGCAAAATTTGGGTCCCCGGGATTTGACCCCATCCTGTTACTTGATGGAGGCTCTCTGCCAAACTACGAAAAGGTTGCTTATCAAGCGGTTGCGGAATGTTGCATAGTCATTCCGGTAAGAGACGGGATGAATCTGGTGCCTTATGAGTACACGGTTTGTCGCCAGGGCAGCCCTGCATTGGCCGGTATGTCTAAGAAAAGTGTGATTGTTGTGTCTGAGTTCATTGGGTGTTCCCCATCCTTGAGTGGGGCAATCAGGGTTAACCCCTGGAATGTGGAATCCATGGCGGAAGCATTAAACTTGGCAATCTCTATTCCAGAGGCTGAGAAACAGCTGAGGCATGAAAAGCACTACAAGTATGTTAGTTCTCATGATGTTTCTTATTGGGCGAGGTCATTTGATCAAGATCTTCAGAGGGCTTGCAAGGATCATTTCATGAGAAGATGTTGGGGAATTGGGTTTGGACTGAGCTTTAGGGTTGTTGCATTGGGGCCAAACTTTAGGAAGCTTTCAGTGGAGCATGTTGTTACTGCTTATAGGAAGACAAGCAGCAGGTTAATTTTGTTGGACTATGATGGGACGATGATGCCAAAGAGCTCCATTGTTAAGACTCCAAGCAAGGAGGTTATAGAGATTCTGAATGGGTTATGTTCAGATGAGAAGAATGTTGTATTTTTGGTTAGTGGTAGAGGAAAAGATTCATTAAGCAAGTGGTTTGAAGCTTGTGAAAAATTGGGAATTTCTGCTGAGCATGGATACTTTACAAGATGGAACCGTGATTCAACCTGGGAGTCATGTCAATTGGCTGAAGATTTGGAGTGGAAAAAGATTGCTGAGCCAGTGATGATGCTTTACACCGAAGCAACTGATGGATCATATATTGAGCACAAGGAGAGTGCTCTTGTGTGGCACCATCAGGATGCGGATCCAGATTTTGGATCATGCCAAGCAAAAGAACTTTTGGATCATCTTGAGAATGTCCTTGCAAATGAGCCTGTGGTGGTTAAGAGAGGACAACACATTGTAGAAGTGAACCCTCAGGGCGTAAGCAAGGGAATTGTTGCAAGGAATCTCGTCTCGGCAATGTCGAGCAGAGGAAAGCCGCCCGATTTTGTGCTTTGCATCGGCGATGATCGGTCCGACGAAGGCATGTTCGAGTCCATCGTGAATTCTCCTCCCAGAAAACCATCCCTGCCGTCGATCTCCGAAGTATTCGCGTGCACGGTTGGCAACAAACCAAGCAAGGCGAAGTACTATCTTGACGATACCGTTGAAGTCATTAAATTGCTCGAAGGAATACTATCGGCTGCCTCGTCCAAACCACAAGTAAGACCTAATTTTCGAGCTTCATTTGAAGGATATCTAACAATGGATGATATGTAGAGAAGACTTTAATCCAATATTTTAATCTGTGAGATATCTTACTAAGGTAGATTCAGACATGATTGCAAGTTATTCTAAACATACAGAATTATAAGGCTTTGCTTTAATACTTGTAAATAGCACAATAGGGGAAATGTATTTCTTTTTTATTTATATATTTTTTGTTAGTTATTTTTAGATTCTTAATTCCAAATGAATGAGAATTCATTCCATTCAGCTTTGTATGAGAAATGTGGGAGTATTTGATGCTTTTGTATACGATACTAAGCCTACGTGTATAGTTTGCGTATCCTATTTGATGAGCTTCGATCGTCATGTGGAGGAGTTTCATCCGGTCGTGCACGGAAGGCCCCAATCTATATTCAACGACTGATGAAAGTGATCCAGATATAAACTATGAGGTTGATTCAATTGAGTTAGATGATAATGCATCGAATTCAGAGTTATACCTGATATAGAGATGCCATCACTAGATGTGAATTGATTTCTCAAGCGTG

Network for GWHGAAEX004262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.20	Glyco_transf_20	21	502	2.40E-167
PF02358.15	Trehalose_PPase	552	786	2.40E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.900
SRP064423	SRR2545915	Juvenile tuber	19.070
SRP108465	SRR5643513	five period of Gastrodia elata	35.800
	SRR5643514	five period of Gastrodia elata	30.760
	SRR5643515	five period of Gastrodia elata	83.030
	SRR5643524	five period of Gastrodia elata	47.310
	SRR5643525	five period of Gastrodia elata	64.450
	SRR5643528	five period of Gastrodia elata	85.810
	SRR5643658	five period of Gastrodia elata	61.610
	SRR5643659	five period of Gastrodia elata	42.880
	SRR5643660	five period of Gastrodia elata	19.140
	SRR5643661	five period of Gastrodia elata	22.830
	SRR5643662	five period of Gastrodia elata	48.590
	SRR5643663	five period of Gastrodia elata	35.480
	SRR5643664	five period of Gastrodia elata	23.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.040
SRP279888	Gastro	Gastrodia elata tuber	20.79
	Juven	Juvenile tuber	9.48
	Mother_Gastro	Mother tuber of Gastrodia elata	85.00
	Mother_Juven	Mother tuber of Juvenile	224.03