Detail information of GWHGAAEX004264/evm.TU.scaffold_147.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3498 | 1.00E-24 | Preprotein translocase, gamma subunit |
| nr | gi|15234793|ref|NP_194222.1| | 7.28E-23 | transport protein sec61 subunit gamma-1 [Arabidopsis thaliana] |
| Swissprot | tr|P0DI75|S61G2_ARATH | 3.00E-25 | Protein transport protein Sec61 subunit gamma-2 |
| trEMBL | tr|R0GPP0|R0GPP0_9BRAS | 3.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:EOA14320.1} |
| TAIR | AT5G50460 | 1.00E-24 | secE/sec61-gamma protein transport protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1693066 | 1694808 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004264
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00584.19 | SecE | 39 | 78 | 2.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07342 | SEC61G, SSS1, secE | Protein export | map03060 |
| Protein processing in endoplasmic reticulum | map04141 | ||
| Phagosome | map04145 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006605 | Biological Process | protein targeting |
| GO:0015031 | Biological Process | protein transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0015450 | Molecular Function | P-P-bond-hydrolysis-driven protein transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.990 |
| SRR2545915 | Juvenile tuber | 40.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.690 |
| SRR5643514 | five period of Gastrodia elata | 24.130 | |
| SRR5643515 | five period of Gastrodia elata | 12.400 | |
| SRR5643524 | five period of Gastrodia elata | 26.490 | |
| SRR5643525 | five period of Gastrodia elata | 131.980 | |
| SRR5643528 | five period of Gastrodia elata | 104.150 | |
| SRR5643658 | five period of Gastrodia elata | 82.690 | |
| SRR5643659 | five period of Gastrodia elata | 18.260 | |
| SRR5643660 | five period of Gastrodia elata | 10.160 | |
| SRR5643661 | five period of Gastrodia elata | 14.160 | |
| SRR5643662 | five period of Gastrodia elata | 20.460 | |
| SRR5643663 | five period of Gastrodia elata | 25.570 | |
| SRR5643664 | five period of Gastrodia elata | 18.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 56.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.93 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.53 | |
| Mother_Juven | Mother tuber of Juvenile | 4.07 |