Gene detail

Detail information of GWHGAAEX004265/evm.TU.scaffold_147.71

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|479131984\|ref\|YP_005071944.1\|	1.00E-21	cyclic nucleotide-binding protein [Arthrospira platensis NIES-39]
KOG	KOG0498	0	K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nr	gi\|743811684\|ref\|XP_010929223.1\|	0	PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L7Z0\|CNG17_ARATH	0	Probable cyclic nucleotide-gated ion channel 17
trEMBL	tr\|M0SBW3\|M0SBW3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P04950_001}
TAIR	AT4G30360	0	cyclic nucleotide-gated channel 17

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1694961	1739821	+

Transcript Sequence
>GWHTAAEX004265 ATGCGCCGCTTCAATAGAGTCCACGACGACGTCGAGCTCTCCGAGATAAAAAAACCGAGGTTTAATAATGATGAAAAGAAATACTTAACTAAATATTTCAGTCAGTATTTGAAACTTGGACGGGCTTCAACCACCAATGTTATTCCTGCAAACACTGCAGGATCCTTGGTTCCCCTCAAGGACAATGAGCCATGGAAGAAATGGATATTTGATCCAGGAAGTGATGTCATGATAAAATGGAACCGTGTTTTCCTTATCACAGGCATGATTGCTCTATTTATAGATCCCATGTATTTCTACTTGTTTTCAATTGAGAATGACAATAAAATCTCATGTGTGAAGAAGATGGACTGGCATTTGAATGTTGCTCTTACAATTTTTCGGACAATTTCTGATGCATTTTATGTACTGCATATATTGTTCAAGTTTCGAACAGCATTTATAGCACCAAGTTCTCGCGTTTTTGGAAGGGGAGAGCTTGTCACGGACATTAAACAGATTGCAAAAAGGTATTTGAAAACAGAGTTTGTTATCGACCTATCAGCGGCATTACCTTTGCCTCAGATAGTGGCCTGGTTAATGATTCCAGGTGTTAAGCATTTGCATCCCCATCAAAACAATAACACATTGAGTCTTGTTGTTCTTATCCAATACTTTGTAAGGTTATACCGCATATTTCCTTTGAGCCAGCAAATTATAAATACTGCTGGTGTTGTTACGAATACTGCTTGGGCAGGGGCTGCATATAATCTGCTTCTTTACATGATTGTTAGCAATGTTATTGGAGCTTCATATTATCTGCTAACTATTGTCCGGCAAACAACTTGTTGGAAATCCGCATGCAGGCTAGAAAATGGCACTTCAGGTCCACCGTGCAAAATGGAGTTTCTCGAATGTGACTTCTTAAGTGCTATTGATCAAACATGGGCCAACAGCACCAGAGTGTTTGCAAATTGCAATGCTAGTGACGATTCTATAAGTTTTAACTTTGGAATATACCAAAATGCATTGACCACTGGTGCTGTATCAACGAGCTTTTTTAGGAAGTACTTTTATAGTCTCTGGTGGGGTTTGCAGAGTTTATGTACATTTGGCCAGGGTTTGTCTCCAAGCACTTATATCTGGGAAACAGCTTTTTCGTCACTCATAGTTCTACTTGGTCTCATTCTGTTTGCACATTTGATTAGCAACATGGAGACCTATTTGCAATCTCTTACCGCTAGGCTTGAGGAATGGAGGTTAAGGCGAAGAGACACTGAACAATGGATGGTCCATCGCCAACTGCCTCAGGAATTGCGAGACCGGATTCGGCGATTTGTTCAGTATAAGTGGTTTGCGACACAAGGTGTGGATGATGACTCTCTATTACAAGCATTGCCAGCTGATCTTAGGCGGGACATTCAACGTCATTTATGCTTGGATCTTGTTCGAAGGGTTCCTTTCTTCTCCCAAATGGACGATCCGCTCCTCGACGCCATATGCGATCATCTAGTCTCATCCCTCAACACGGAAGGCTCCTACATTGTTCGTGAAGGCGACCCTGTGACGGAGATGCTCTTTGTGATTCGTGGAAAGCTTGAGAGCTCTACCACCAATGGTGGCCAAACTGGTTTCTTCAATTCCATAATCCTGAGGCCGGGTGATTTTTGCGGCGAAGAGCTTCTCTCATGGGCCCTTCTTTCAAAACCAGCCACAAGCCTGCCCTACTCCACTCGAACCGTTCGAGCCCTCGTAGAAGTTGAGGCCTTCGCTTTAAGAGCAGAAGATCTCAGCTCTGTCGCCGCTCAATTCAGGAGGCTCCATAGCAAGAAACTACAGCACACCTTCAGGTATTACTCCCACCATTGGAGGACATGGGCTGCATGCTTCATTCAGGCGGCGTGGCGCCGCTACAAAAGGAAGATGCAAAAAAGTATTAGCAGGATCGAATCTCTCTCCTTTAGAGCTGAAAGGTCGGCTGCTCATGAATTCAACTCCTCGCATACAGAGCAAATTACCGGCGAAATGATGTGGGATTTTGCGTTTGCGGCCAGCACCAGCAGGAGTTCTCAGGGATGCAAGGGTGGTGCTGATATATCCAAGTTGAGGAAGCCTGATGAGCCTGATTTTTCTGCAGATGGAGATCAATTTAGGGAAACTGCCATTCGACCTCGATTTCCATCCTTCGGCTCAGCTTGTTGCATCCGCACTTATCAGCGGCGAACTCCATCTATACCGTTATGGCGCCGGTTCGCAGCCCGAAAGGTTTCAGCGCACGACGAGTCTTGTAGAGCCGTTCGATTTGTTGATTCGGGAACCGTGGTTCTAACGGCTTCGCCTGATTGCTCAATTCTTGCCACTGATGTGGAGACTGGAAGGGTCATTGCTCGTTTGGAAGAAGCTCACGAGGATTCGATAAATCGTCTCGTCATTTTGACTGAAACAACAATAGCATCGGGAGATGATGAAGGATGCATTAAGGTTTGGGATACTCGTAATCGTTCTTGTTGTAATTCTTTTGAAGCCCATGAAGATTTTATCTCGGATATGACATTTATGTCTGGTACAAGACAACTACTTGCAACAAGCCTCTATTTTGTTGTTGACTGCGTTGAGGGGATTGGGAGTTGAAGGGGGGAATGATGAGTAAAATGATTTTAATATTTTTTCAAAGTTAAGCAAGCGCTAACTTTTGGCTCATTATGTATGGCCATTTTTTTGTTTCTTATTTCTTGTTGCATTTCCAAGTTTCAATACTTTGACCCTTATTTTTAATATTCTGAATAAATTTAAATTGTTTTTCCGTGTGTATATTGTTGAATTATTTTTTAGATACTTGTAGCATCAAATGATTGTGTATATTATTTTTTAGATACTTGTAGC

Network for GWHGAAEX004265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.30	Ion_trans	80	408	1.20E-24
PF00027.28	cNMP_binding	504	595	9.50E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0006811	Biological Process	ion transport
GO:0005515	Molecular Function	protein binding
GO:0005216	Molecular Function	ion channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.530
SRP064423	SRR2545915	Juvenile tuber	19.700
SRP108465	SRR5643513	five period of Gastrodia elata	15.940
	SRR5643514	five period of Gastrodia elata	18.540
	SRR5643515	five period of Gastrodia elata	17.000
	SRR5643524	five period of Gastrodia elata	19.200
	SRR5643525	five period of Gastrodia elata	8.830
	SRR5643528	five period of Gastrodia elata	9.890
	SRR5643658	five period of Gastrodia elata	10.220
	SRR5643659	five period of Gastrodia elata	9.480
	SRR5643660	five period of Gastrodia elata	11.500
	SRR5643661	five period of Gastrodia elata	9.540
	SRR5643662	five period of Gastrodia elata	8.310
	SRR5643663	five period of Gastrodia elata	10.020
	SRR5643664	five period of Gastrodia elata	10.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.360
SRP279888	Gastro	Gastrodia elata tuber	12.80
	Juven	Juvenile tuber	16.73
	Mother_Gastro	Mother tuber of Gastrodia elata	23.77
	Mother_Juven	Mother tuber of Juvenile	36.52