Detail information of GWHGAAEX004267/evm.TU.scaffold_147.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|288561203|ref|YP_003424689.1| | 4.00E-128 | seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1] |
| KOG | KOG2509 | 0 | Seryl-tRNA synthetase |
| nr | gi|743884156|ref|XP_010909604.1| | 0 | PREDICTED: serine--tRNA ligase-like [Elaeis guineensis] |
| Swissprot | tr|O81983|SYS_HELAN | 0 | Serine--tRNA ligase |
| trEMBL | tr|U5D8N7|U5D8N7_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN16753.1} |
| TAIR | AT5G27470 | 0 | seryl-tRNA synthetase / serine--tRNA ligase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 1794338 | 1824017 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02403.21 | Seryl_tRNA_N | 65 | 176 | 1.20E-25 |
| PF00587.24 | tRNA-synt_2b | 285 | 472 | 1.60E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01875 | SARS, serS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006434 | Biological Process | seryl-tRNA aminoacylation |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004828 | Molecular Function | serine-tRNA ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 82.920 |
| SRR2545915 | Juvenile tuber | 86.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 84.070 |
| SRR5643514 | five period of Gastrodia elata | 77.690 | |
| SRR5643515 | five period of Gastrodia elata | 71.130 | |
| SRR5643524 | five period of Gastrodia elata | 79.420 | |
| SRR5643525 | five period of Gastrodia elata | 76.680 | |
| SRR5643528 | five period of Gastrodia elata | 97.490 | |
| SRR5643658 | five period of Gastrodia elata | 76.380 | |
| SRR5643659 | five period of Gastrodia elata | 105.530 | |
| SRR5643660 | five period of Gastrodia elata | 108.250 | |
| SRR5643661 | five period of Gastrodia elata | 98.800 | |
| SRR5643662 | five period of Gastrodia elata | 92.760 | |
| SRR5643663 | five period of Gastrodia elata | 93.140 | |
| SRR5643664 | five period of Gastrodia elata | 95.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 92.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 102.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 91.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 92.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 91.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 87.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 83.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 87.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 87.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 95.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 95.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 114.74 |
| Juven | Juvenile tuber | 140.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 69.89 | |
| Mother_Juven | Mother tuber of Juvenile | 135.94 |