Detail information of GWHGAAEX004270/evm.TU.scaffold_147.77


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672137517|ref|XP_008792488.1|3.29E-88PREDICTED: F-box protein SKIP24 isoform X2 [Phoenix dactylifera]
Swissprottr|Q9CAZ0|SKI24_ARATH2.00E-54F-box protein SKIP24
trEMBLtr|B4FPD9|B4FPD9_MAIZE2.00E-73Uncharacterized protein {ECO:0000313|EMBL:ACF83982.1}
TAIRAT1G087108.00E-54F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015018792971894120-
Transcript Sequence

Network for GWHGAAEX004270

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like2487.00E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.810
SRR2545915Juvenile tuber19.780
SRP108465SRR5643513five period of Gastrodia elata15.820
SRR5643514five period of Gastrodia elata16.300
SRR5643515five period of Gastrodia elata16.050
SRR5643524five period of Gastrodia elata15.430
SRR5643525five period of Gastrodia elata15.230
SRR5643528five period of Gastrodia elata19.500
SRR5643658five period of Gastrodia elata15.610
SRR5643659five period of Gastrodia elata19.690
SRR5643660five period of Gastrodia elata18.810
SRR5643661five period of Gastrodia elata19.360
SRR5643662five period of Gastrodia elata14.860
SRR5643663five period of Gastrodia elata14.790
SRR5643664five period of Gastrodia elata15.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.830
SRR6049655Rhizomagastrodiae_C368-T10_good_113.250
SRR6049656Rhizomagastrodiae_C368-T07_good_114.730
SRR6049657Rhizomagastrodiae_C368-T07_good_114.870
SRR6049658Rhizomagastrodiae_C368-T04_good_112.870
SRR6049659Rhizomagastrodiae_C368-T04_good_111.370
SRR6049660Rhizomagastrodiae_C368-T01_good_112.660
SRR6049661Rhizomagastrodiae_C368-T04_good_112.740
SRR6049662Rhizomagastrodiae_C368-T01_good_116.540
SRR6049663Rhizomagastrodiae_C368-T01_good_112.700
SRR6049664Rhizomagastrodiae_C368-T10_good_117.710
SRR6049665Rhizomagastrodiae_C368-T10_good_117.710
SRP279888GastroGastrodia elata tuber 21.55
JuvenJuvenile tuber23.93
Mother_GastroMother tuber of Gastrodia elata 15.62
Mother_JuvenMother tuber of Juvenile 26.50