Gene detail

Detail information of GWHGAAEX004272/evm.TU.scaffold_147.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|472323102\|ref\|YP_007672601.1\|	6.00E-24	NUDIX hydrolase [Polaribacter sp. MED152]
nr	gi\|672133028\|ref\|XP_008790115.1\|	0	PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 3 [Phoenix dactylifera]
Swissprot	tr\|Q8L831\|NUDT3_ARATH	0	Nudix hydrolase 3
trEMBL	tr\|M0RKW6\|M0RKW6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P23910_001}
TAIR	AT1G79690	0	nudix hydrolase homolog 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	1907357	2025980	-

Transcript Sequence
>GWHTAAEX004272 ATCGGCCACAGGCTGGGTTGGGAAAAATCGGATAGAAGGGAAAATTATATCCTGAAGCGGGCCCGGCCCGAATCAGGAACCGAAAGTGGCGACAGAAAAAATGAGCTTCTATTAGCATTGAACTTTACACTCAAATCTTAATATTTATTTTCTTAGTTCTTCTGAATTTGTAGACTGATTCGTTTCCGTCAATGGAGCCGGGGTCTGATCTGCATCCGCATGACGATGAGCTCCTCGACGTCCTCACGAGAATCGGCGAGAAGACCGGGAACTCCAAGCCGAGGGGACTTGTGCACAGGGACGGCAATTACCATCGGGCTGTTCACGTGTGGATTTACTCGGAGAGTACACAGGAGCTTCTTCTTCAGCGTCGCTCTGATAGCAAGGAATCCTGGCCTGGATTGTGGGATGTCTCCAGCGCCGGCCATATTTCTGCAGGCGACTCTTCACTTCCCACTGCAAGGAGGGAGCTCCATGAAGAGCTGGGCATAAGTCTTCCAAGGGATGCTTTTGAATTGATATTTGTCTTTCTTCAGGAGTGTGTAATAAATGATGGAAAATTTATCAACAATGAATATAATGATGTATATCTGGTAACAACATTGTCGCCAATCCCTCAGGAGGCGTTCATTCTCCAGGAAACAGAAGTTTCTTCCGTCAAATATATATTTTGGGCAGACTATAAAAGTCTTCTGGCAAATGGTGATGTGGACTATGTTCCTTATGATGTATCTGGGCACTATAGTCTTCTTTTTGATGTCATTGAGCAGAGGTGCAAGGAAAGTGTGGAAGCTCGTAGTCTAGACCTGCAGAAAAAGCTGAGTCGTTATGCGCCTATCTATTTGGATGCTGTGTTGAATGGACTTTCTAATGCAGACAAGGAGGCATTGGCCTTAATAATTAAATCATCAATGATCATTGAGGAAATATTCTACGAGCAGGTTTGGTATGGTAATTTGGCGCTTAGAGATTGGTTGAAGGAACATTCTAAAGCTTCGGACTTTGACAAGTTAAAATGGATGTATTATTCCATTAATAAGAGCCCATGGTCGTGTATTGATGAGAACAAGGCTTTTTTGACTGCAGCTGATTCTGCTATCAAATTGCTTGGTATGTCCACTGGAACAGTTCCCGGTTGGAAAGGCCTTGAATATAGAGTTGCATTTCCCTTGGTGAAGCCACCAGGTGCAAATTTTTATCCACCTGATATGGACAAATTGGAATTTGAGAAGTGGAAGGCTAGCTTAACAGAAAGTGCGCAGAATGAGGCTACAGGGTTTTTCAGCGTCATTAAAAGGCATGATGAATCTGATTTTATTAGGGATGCATCCATCAATGCATCCTGTGTCAATAAGCAATCTATGTTAGCCCAGCCATCCATGTCACATGGTCTGTTTGTTGTTCCATATTCTCAAGAGTATAGCAAATTCCTTACGAGAGCTGCTGAACTTCTTCAGAGAGCAGCAGAAACAACTGATTGCTCTAGCCTGAAGAAGTTGCTGAAAACCAAAGCCGATGCTTTTATGTCAAATGACTACTATGAATCAGATATAGCCTGGATGGAATTAGACTCAAAATTGGACGTAACAATTGGACCATATGAGACGTACGAAGATATAATTTTTGGGTATAAGGCTACATTTGAAGCATTCATTGGAATACGTGATGATGTTGCAACTTCTCAAGTTAAATTATTTGGGGACCGTTTGCAGCTTTTGCAACAAAATCTTCCATTGGATAATATATATAAAACAGGCGATGTTGTTGCTGCTCCAATCCGCGTAATAAACCTCATCTATAATGCCGGGGATGTAAAAGGCCCTCAAACTGTGGCTTTTAATTTACCAAATGATGAACGCATTGTCAATGAGCGTGGAACATCAATGGTCATGCTTAAGAATATTTCTGAAGCCAAGTTTAAGCATATTCTTCTGCCCATAGCTGATATATGCATTAATGAGAAGCAGAAGGAATACATTGATTTTGAGTCTTTTTTTACTCACACGATTTGCCATGAGTGTTGCCATGGTATTGGGCCTCATACTATTTATCTTCCAAGCGGCCGAAAATCAACTGTGAGATTGGAACTTCAAGAACTCCATTCAGCCTTGGAAGAAGCTAAAGCAGATATTGTTGGCCTCTGGGCCTTAAGATTCCTCATTAATCAGAAACTGCTTCAAAGAGACCTATTAAGGCCTATGTATGTTTCATTCCTTGCTGGATGCTTTCGATCAGTACGCTTTGGATTAGAAGAAGCGCATGGAAAAGGGCAGGCATTGCAGTTTAACTGGTTATATGAAAAAGAAGCTTTTATTTTGCACTCAGACGATACCTTCTCTGTAAATTTTGAAAAGGTGGAAGCAGCTGTTGAAGACCTCAGCAGGGAAATCCTAACCATTCAAGCCAGAGGTGATAAGGCTACCGCAAAGAATCTTTTGCAACGATATGCAAAAATGACACCACCATTGTCTTCTGCACTGGAAAAACTGGAAAGAGTTCAGGTACCTGTTGATATTGCTCTCACTTTTGGTGTGTTGGATCTCTTATAATGCTTAAAAATGTTGAAGGTTTAACAAGCATTACTGTGAGCTTTTTTACTCAGATGAAAGGAAAGAGTTAAAAAAATACGTTTTAATGGCACTTAAGATACTTGGTTGTTGTTATTTCCCTTTTCTTTTCGTTGGACCCTGATTTTGTTGAAGAGGCATACTTGTATTCAGACCAATAATATCTCTTAGGCCAAGAGAGAAGGTCTTTAGACAATTGTTGAGTAATATTATACTTATGCTTTTGTCTATGAATTACTCAATTCATGGGGCCTTTACATGCAAAAATGTCTGGATTCATCATAAAATTATACTTAGTCTTTA

Network for GWHGAAEX004272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00293.27	NUDIX	40	167	2.20E-13
PF03571.14	Peptidase_M49	334	615	7.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.920
SRP064423	SRR2545915	Juvenile tuber	25.240
SRP108465	SRR5643513	five period of Gastrodia elata	22.290
	SRR5643514	five period of Gastrodia elata	32.010
	SRR5643515	five period of Gastrodia elata	22.990
	SRR5643524	five period of Gastrodia elata	29.390
	SRR5643525	five period of Gastrodia elata	37.380
	SRR5643528	five period of Gastrodia elata	34.670
	SRR5643658	five period of Gastrodia elata	35.120
	SRR5643659	five period of Gastrodia elata	9.950
	SRR5643660	five period of Gastrodia elata	11.050
	SRR5643661	five period of Gastrodia elata	8.890
	SRR5643662	five period of Gastrodia elata	10.490
	SRR5643663	five period of Gastrodia elata	12.700
	SRR5643664	five period of Gastrodia elata	13.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.020
SRP279888	Gastro	Gastrodia elata tuber	17.48
	Juven	Juvenile tuber	21.93
	Mother_Gastro	Mother tuber of Gastrodia elata	25.23
	Mother_Juven	Mother tuber of Juvenile	24.44