Detail information of GWHGAAEX004273/evm.TU.scaffold_147.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21852.00E-148Predicted RNA-processing protein, contains G-patch domain
nrgi|743767551|ref|XP_010914043.1|0PREDICTED: zinc finger CCCH domain-containing protein 18 [Elaeis guineensis]
Swissprottr|Q6K687|C3H18_ORYSJ0Zinc finger CCCH domain-containing protein 18
trEMBLtr|A2XAH2|A2XAH2_ORYSI0Putative uncharacterized protein {ECO:0000313|EMBL:EAY87832.1}
TAIRAT2G248302.00E-148zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015020274592039228+
Transcript Sequence

Network for GWHGAAEX004273

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01585.22G-patch3013424.60E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.620
SRR2545915Juvenile tuber8.090
SRP108465SRR5643513five period of Gastrodia elata10.960
SRR5643514five period of Gastrodia elata14.270
SRR5643515five period of Gastrodia elata11.240
SRR5643524five period of Gastrodia elata11.810
SRR5643525five period of Gastrodia elata20.730
SRR5643528five period of Gastrodia elata17.800
SRR5643658five period of Gastrodia elata19.570
SRR5643659five period of Gastrodia elata12.610
SRR5643660five period of Gastrodia elata14.660
SRR5643661five period of Gastrodia elata11.940
SRR5643662five period of Gastrodia elata15.120
SRR5643663five period of Gastrodia elata13.940
SRR5643664five period of Gastrodia elata18.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.400
SRR6049655Rhizomagastrodiae_C368-T10_good_18.340
SRR6049656Rhizomagastrodiae_C368-T07_good_112.960
SRR6049657Rhizomagastrodiae_C368-T07_good_114.070
SRR6049658Rhizomagastrodiae_C368-T04_good_114.280
SRR6049659Rhizomagastrodiae_C368-T04_good_115.730
SRR6049660Rhizomagastrodiae_C368-T01_good_113.750
SRR6049661Rhizomagastrodiae_C368-T04_good_112.920
SRR6049662Rhizomagastrodiae_C368-T01_good_111.480
SRR6049663Rhizomagastrodiae_C368-T01_good_114.990
SRR6049664Rhizomagastrodiae_C368-T10_good_111.780
SRR6049665Rhizomagastrodiae_C368-T10_good_111.780
SRP279888GastroGastrodia elata tuber 14.96
JuvenJuvenile tuber11.79
Mother_GastroMother tuber of Gastrodia elata 13.63
Mother_JuvenMother tuber of Juvenile 9.08