Gene detail

Detail information of GWHGAAEX004276/evm.TU.scaffold_147.83_evm.TU.scaffold_147.85

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672167486\|ref\|XP_008803708.1\|	0	PREDICTED: BTB/POZ domain-containing protein NPY1-like [Phoenix dactylifera]
Swissprot	tr\|Q8H1D3\|NPY1_ARATH	0	BTB/POZ domain-containing protein NPY1
trEMBL	tr\|I1QP01\|I1QP01_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA09G0078000.1}
TAIR	AT2G14820	9.00E-167	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	2180453	2185715	+

Transcript Sequence
>GWHTAAEX004276 AGAGAGAGAGAGAGAGAAAGAGGGAAGGGAAGGAGAAACGATCGAGGTGACTTAACAGAGTTGTCTCAATCTTCTTTTTGGGTTCTAGAACAGAATAGAGCTTGAGAGAAGGAGATGAGCCTTGAGAAGCCAGATTGAAGGAGTTTTGTTTCTGCAGATTTCCCTTCCTTTTGTTTCGGTAGATATTTGCAGAGGGAGCAAGCATGAAGTTTATGAAGCTGGGATCAAAGCCAGATTTGTTTCAATCTGAAGGAAACAACATTAAATTTGTGTTATCAGAACTTGCCACTGATGTTGTTGTTGTTGTCGATGAAGTTGAGTTCTACTTGCACAAGTTTCCTCTTCTTTCCAAGAGCTACAAACTGCAAAGATTGATTCTTGAATCTAACGTTGAAGGCACAGACAAGATTATCATGAATGATTTTCCTGGCGGGCCAAGAGCTTTCGAAATATGTGCTAAATTTTGCTATGGAATGACTGTCACTCTCAGCCCCTACAATGTTGCGGCAGCCAGATGCGCCGCCGAATGCTTGGAGATGACCGAGGATGTTGAGAAAGGAAATCTGATATACAAAATTGAAATTTTCTTAAGCTCCAGTGTATTCCGCAGCTGGAGAGACTCCATCATCCTTCTCCAGACCACAACTTCCTTGCATCCTTGGTCAGAAGAGCTTAAAATCGCAGGAAGGTGCATTGATTCCATTGCTTCGAAATCCTCTGTTGATCCTTCCGGTGTTCATTGGCCATACACTTATAGCAAGAAACCATCAATTTCATATATGATAAGTGAGAATCAGCATAAGAATTTTGCTCCCAAAGATTGGTGGATCGAAGATATATGCGAGCTGGATGATGATCTATATAAGCGCACAATCGCAGCCATAAAATCTAGAGGAAGAATGCCTTCTGAGTTGATTATTGAGGCCTTGAAAGCTTATGCAATGAGGTGGTTACCAGACTCTTATGCTGCCTTGGTCTCTGATGACTATACTTTAAGAATTAAGTCTCTTGTAGAAACCATCATATGGCTTTTTCCATCAGAAAAGGCTTCTACTTGTTCATGCAAGTTTTTATTAAAGTTGCTTAAAGTTGTCATACTGGTTGATGCTGGCAACTTGTTGACAGAGGAGCTGATGAATAGGGTGAGTGCACAGTTGGACAAAGCTTCAGTTAAGGATTTGTTGATACCATCAAGATCTTCAGTTGAAGAAACCGCTTATGATGTTCCTCTAGTGCTCAGTCTGGTTAAGAGGTTCATTATGCGAGAGAGAGGTGCTCCGGCGGATTTTGCCGAGTGCGAAAATAGAACTGAAGCATTAATTTTGGGGCAGACTTCATTGCTTAGTGTGGGCAAATTGGTTGATGGATACCTTGCCGAAATAGGAACGGACCCCGAGCTTATGATATCGAGCTTCATAGATCTTGTGAGAGCACTTCCGGAAGCGGCGCGGCCCACTCATGATGGGTTGTATGCTGCTATTGATGTTTTCCTAAGGGAGCACCCTAACCTAACAAAAGCTGAAAAGAAGAGTATTTGCTCCTTGTTGGATTTGAAAAGGCTCACTCCAGAAGCATCAATCCTCGCCGCGCAGAACGATCGGCTGCCTCTGCGCGTCATAGTTCAAGTTCTTTTCCTGGAGCAGATGAGAGCGGCTGGTGGAGCGCTGAAAGGTTCAACAAGTAGCATGCTGAATGGGAGCACAAGATTAACAGGAGAAATTGAGGAAGAAGATGCGGCTTTAGAGAAGCAGTTAAGGATACTGAAGGTTGAGGAAGAAGAGGAGACAAGGAAGGACAATGAGAGAGAGAATAAGAGAAGGCTCCTTTTACCGTCCCGATCTAGGCGGATACTAGACAAGCTGTGGGCGGGAAGAGGCCGGAGCTCAGAGACTTCTGGCAGTTCGCAGAGTCCCCCAACTTCGGCGAACCCGGCGGAGGCATCCACGACCAAATCTTCGGTCTCTTCTTCAAGGCAGAGGAGGCACTCTGTGTCTTAGCAGAGCAAGCTTTGTGTTTTGTTTTATTCTATTTTATTTATTTTTAGCTGATGTAGTTGGAGAACAGGGACCAGGAGATTTCATTAGTCAGTATTTGTTGCTCTCTTGATGCTCAAATTTTTCTTTTGTTCTTTAGTTACTGTATTTTGACCCCTTTTAATTGGAATAGGAAGAAAGGATTTCTAACATCAAATTTTGTGATGTTATACCCTAATAATTCAATTCTCGATGAATACATAGTCACTTCTTATTTGAATCTCTTCTTTACAA

Network for GWHGAAEX004276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	26	116	3.30E-05
PF03000.13	NPH3	206	458	5.30E-79

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.490
SRP064423	SRR2545915	Juvenile tuber	4.810
SRP108465	SRR5643513	five period of Gastrodia elata	11.330
	SRR5643514	five period of Gastrodia elata	11.030
	SRR5643515	five period of Gastrodia elata	9.360
	SRR5643524	five period of Gastrodia elata	10.300
	SRR5643525	five period of Gastrodia elata	17.050
	SRR5643528	five period of Gastrodia elata	9.250
	SRR5643658	five period of Gastrodia elata	13.960
	SRR5643659	five period of Gastrodia elata	1.320
	SRR5643660	five period of Gastrodia elata	1.520
	SRR5643661	five period of Gastrodia elata	1.960
	SRR5643662	five period of Gastrodia elata	3.560
	SRR5643663	five period of Gastrodia elata	0.790
	SRR5643664	five period of Gastrodia elata	4.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.160
SRP279888	Gastro	Gastrodia elata tuber	3.48
	Juven	Juvenile tuber	7.15
	Mother_Gastro	Mother tuber of Gastrodia elata	17.11
	Mother_Juven	Mother tuber of Juvenile	10.06