Gene detail

Detail information of GWHGAAEX004280/evm.TU.scaffold_147.88

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|406024929\|ref\|YP_006705230.1\|	8.00E-14	Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
KOG	KOG1865	8.00E-153	Ubiquitin carboxyl-terminal hydrolase
nr	gi\|743857399\|ref\|XP_010942106.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 23 [Elaeis guineensis]
Swissprot	tr\|Q9FPS4\|UBP23_ARATH	1.00E-179	Ubiquitin carboxyl-terminal hydrolase 23
trEMBL	tr\|M0SBT4\|M0SBT4_MUSAM	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR	AT5G57990	8.00E-153	ubiquitin-specific protease 23

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	2240137	2250786	-

Transcript Sequence
>GWHTAAEX004280 ATTTAGAGGAGTCTCTAACGCCATTATTTATAGCATTCTTTTGTTTCCTAAAACCCTTTTTTTTTTGTCTCCAAATTCGGCAAATCGTCCCGATGACGGCGGCGGGGGAGGGGAAAACAGCTGCAGCAATGGCCGCCACTGGAGAACCGCTCTTCACTCGAAGGATCGAGTTCCATCAAGCGAGGAGGCCATATACCGGCGTTCCTATCTCGTCAGGGGATTTCCGCCTCGAAATCTTAAACCCTAGCAATTTGGACGAGCGAAGGGCTGCATCGGGCTGCGGCGTCGGGCCATCGGCATCAGAGACTGGGGAGCATGTCAAGAGATCAGCAGGTGGGGAGGCTTACGATCACGGTCTTGATCCCGAACTCAGCTTCAGAATCAGCTTCCAGAGGATCGGTGCTGGTTTGGAAAATCTTGGAAATACATGCTATCTGAATTCAGTTCTTCAATGCCTCACTTATACAGAGCCCTTTGCAGCATATTTGCATAGTGGGAAGCATAAATCTACTTGCCGTGCTGCTGGATTTTGTGCATTGTGTGCCCTACAGAATCATGTCATGGATGCCTTACAGTCTACTGGAAAGATATTAAGGCCGTTTCATCTTGTGAGGAACTTGCGGTGTATATCTCGAAGTTTCCGCAATTCCAGACAAGAAGATGCTCACGAGTACATGGTTAATTTGCTTGAATCAATGCATAAATGTTGTTTGCCTTCTGGTGTCCCAACTGAGTCCCCAAGTGCATATGAAAAGAGTTTAGTTCACAAGATATTTGGCGGCCAGCTCAGGAGTCAGGTCAAATGCATGCAGTGTTCTTATTGTTCTAATAAATTTGACCCCTTTCTGGATTTGAGTCTCGAAATTGTGAGGGCTGATTCATTGAGAAAAGCTTTTGCACATTTCACTGCAACCGAGGAACTTGATGGTGGTGAGAAACAGTATCAATGCCAGCGGTGTAAAGAAAAGGTTCAGGCATTTAAGCAACTAACCATTCACAAAGCTCCTTATGTGCTAACCATTCATCTCAAACGTTTTGGTTCAAGCATTCGTGGAGAGAAGATTAGCAAGAAGGTCGAGTTTGAAACTACTTTGGACTTGAAGCCTTTTGTCAGTGGCTCACAGGAGGGTGAGCTGAAATATACTCTTTATGGAGTGCTGGTTCATGCTGGTTGGAGTACTCACTCTGGTCATTATTTCTGTTATGTTCGGACCTCTTCGGGTTTGTGGTACTCTCTTGATGATAATCATGTATCACAAGTCAGTGAGAAGACCGTTCTTTCACGAGAAGCATACATGCTGTTTTACGTCAAGGATAGAGTCACTAATATTAAACGATCAGTTGAGGCTAAACTCAACACTGGTATTTCTGCAAATTCTAATGGAAATAAAGGAACTCAATTGGCAGAGGGAAAATTGAATGCTGCAGTTTGCAGCAGCTCATCAGCCAAAACTAGACATGATGTTATTTTTCAGAGTCTTTCTATGATGGGCAGTTCAATGCAGAATCAGCTCAAGAATCAACAGCGGGCAGCTGTTCAATTTAAGGAGATTTCTTTTGATGTCAAGGAAGGCAACGCCATTAAAAGTGCTCAAGAGACTGCACCCCTACAAAAGATGGAGACTATTTGCACAACAAATGGTAAGGATGATAAGAGACCTTTGATCTCCTCAAATGCTATGAATGGTCCTATAAAGGAAGCTGCTGACACAAAGATCAAGGAACACAAGGCTCATTTCTCTGATATGAAAGGACAAAAAGATGGGGTAACCTTAACAAAGAACGTCGAAGTACCTTTGAAGGCTGCCAAAGGCCAGTATCTCGGGCGCAGGCAGCTGTTTTTCGTGTCTCTGAGGCTGCATAAAAAGAAGAAAAGGAGAACGAAAACACACCATCGAAATTCTACTACTAACAATGAGATGAACGGGTGGATGGCAGATCCATGCACCGACCCTCAAGGAACGGCGTCCACATCCGAAACTATCGAAATCAAGAGAGAGAGAAACATCCGGCAAGGCAAAGAAATTCACGCCCATCGTAAAGGGGGGGAACGAAACGGCGAAATTCTCGAGAGCTTTCCGGCGAGCTTGAGAGAAACCACCGTTGCTAGGTGGGATGCCAAGGGCGTGTTGGCAGCTCAAGCTCATGAATCCGATGACCCTCCAAAGAGGAGCATTGGCTATTTGCTGGACGAATGGGATGAGGAATACGACAGAGGTAAGAGAAAGAAGTTAAAATCCAGGCAGTGGTTTGCTGGGCCGAATCCTTTCCAGAAAACAGCCGACCTATTGAGAACACACAGAAGCAGCTTTGGAAATGAGAGCCATTGAGGGTTGGTTGGGGTCTTAGCAACCAGAAAAGCATCTCTACATACACGAGCACAGCTTTTCATGACTGGTGCCGTCCACACTTTCCTGGCCTCGACAAGCTCACGAAGAAGGCTGTCGATGGCTAAAATAGGGATGATCCAACCCTGCAAACTCAAGATTTGGGTTTAAGAACAGCATTAGCGCTCGAAGGCTGTTGAAAATGTCGACGGCATCGTCAGTTTCTGAATATTGGTGCTACTTGTGTAAAGTTTCATTTTGTTTGTTGATTTGGGACAATTAGCCGTCTTACAAAAATAGTAGTGACTATAGGCGCTGCGAGTAATTTTAATGTTTTTTTGAGTAATATTTAAAGTTTTGAGTGTTAAATTAAGTAAAAAATCTCCTATTTTTGTTGAATTGTTAAATAGCCACCTTACAAAGGTATTCTCATTTCATCCGAATTTAGCTACTTTTTTTGTCAAGATAATACCAAGAGATGTTTGTCAAAATGTTCCCACGAC

Network for GWHGAAEX004280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.28	UCH	105	405	1.70E-55

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	82.350
SRP064423	SRR2545915	Juvenile tuber	140.060
SRP108465	SRR5643513	five period of Gastrodia elata	44.090
	SRR5643514	five period of Gastrodia elata	41.160
	SRR5643515	five period of Gastrodia elata	36.290
	SRR5643524	five period of Gastrodia elata	39.620
	SRR5643525	five period of Gastrodia elata	19.900
	SRR5643528	five period of Gastrodia elata	16.530
	SRR5643658	five period of Gastrodia elata	14.090
	SRR5643659	five period of Gastrodia elata	53.950
	SRR5643660	five period of Gastrodia elata	56.650
	SRR5643661	five period of Gastrodia elata	50.260
	SRR5643662	five period of Gastrodia elata	52.410
	SRR5643663	five period of Gastrodia elata	52.720
	SRR5643664	five period of Gastrodia elata	57.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.310
SRP279888	Gastro	Gastrodia elata tuber	35.25
	Juven	Juvenile tuber	64.73
	Mother_Gastro	Mother tuber of Gastrodia elata	19.91
	Mother_Juven	Mother tuber of Juvenile	49.23