Gene detail

Detail information of GWHGAAEX004281/evm.TU.scaffold_147.89

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1525	8.00E-86	Sister chromatid cohesion complex Cohesin, subunit PDS5
nr	gi\|672141034\|ref\|XP_008794336.1\|	3.03E-155	PREDICTED: uncharacterized protein LOC103710418 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O04716\|MSH6_ARATH	3.00E-06	DNA mismatch repair protein MSH6
trEMBL	tr\|M5XL83\|M5XL83_PRUPE	9.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26689.1}
TAIR	AT4G31880	8.00E-86	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000150	2254248	2295241	-

Transcript Sequence
>GWHTAAEX004281 ATGAAAATTACGATTCCAGTTGCGGACTCGTCTTCAGGCTCCCGTCCGTCTGAAACCCTATTTTCCATTCTTCTTCTTCTTCTTCTTCTTCTGTCTATATCGTCGACGCCGAGGAGCCAAAGCTTCTTCGATTTCCATTTTCGTCCGGCGAAACACTCGTCTCTTCTTCCGATTTGCGGGAGCCGTCGTATTCTGCTTTATCTGGCGGAAGTGTCAGCAGTCACTGGAATTCCGAAACATTTTAGAGGTGCGCAAATGTCACCCAGGGATTCAGAGCTCGAAGACTGCCTGAAAGAAATAGGGCACAGGCTTGCGTCTCCCCCGTCTGATTCACAAGAGCTCCTGCTGCTTCTCGATAAAGCTGAAATTTACTTGTCAAGGGTGGAGCAATCTCCATCTGCATCGATGTCATCCGCACTTCGGCCTTCTATGACGGCGTTGACTGCTAAGGATCTTCTGCGGCACTCCGATATGGATGTGAAGGTTGCAATTGCATCTTGTCTTAGTGAAATAACAAGAATTACTGCACCAGATGCTCCTTATGACGATGATCTGATGAAGGAGATATTTGGGCTGATTGTAGGAGCTTTTAAGAATTTGGACGATATGTCAAGTCGCTCATTTTCTAAAAGAGTTATAATTCTCGAGACAGTTGCAAAAGTCCGATCTTGCGTTTTGATGCTAGATCTTGAATGTGATGATTTGATATCAGAAATGTTCCATCATTTTTTGAAGACAATAAGATCAAAGCATTCTGATACTGTTTTCTCTTCAATGGAGACTGTTATGACACTAGTTATAGAAGAGACTGAAAATATATCTGCACCTTTTCTTTCTTGTTTATTGGATTGTGCAAAAGTTGCTCAAAAGAATATTCTGCCAATAGCGCGGAAGCTAGCTGAGAGAGTACTGATTAACTCCGCTTCCAAGCTAAAGCCTTATTTGACAGAGCTATTCAATGGCAGTGGTGCAAATGATTATAGTAAAACTGTTGCTGCTTTATTTCAGGGGAACCCTGACACTTCAATACAGACTGAAACAAGTGAGCATGATAAAAATAAGGCAGATGACCACAAGTTATCTATGGGAACCCTTTCTGATGATGTGACCAAGGGATCTGCTAAACAAAATGGCGAAAAATTTAATCCTGATAAAGCAGTCACTGCTGCTGATATGCCTTCCAAATCGGGAATAAGCAATGGGTCGTTTCAGATTGGAACTGGTGATTCCATAGCTTTAAAACAAAAAACTGAATTTCACCAGCATGATAGTCAAGGAAATACTGGAGCTAGTTTAGTAGATTCTGATGCCTTGGATTCAGCTACTGTGATGCCTGATAGTAAGCTAGATTCTAGTACTCGCAAAGGTGGAAGAAAAACTTTGTTGAAGTTTTCAGTTAACAATGATAATAATGGCGTTGGCAATAAGAAAAAAGATCTGACTATTTCTCGAAGAAAAAAGGGCAGAAGCAAGGGAATTGAAATTTCTCAAGGTGATGGCCCGTTAAAAGAAGTGCAATCGGCAGTGTGCTCAACAGCTGAAAAGCAGAATGAACTTGAATTTAATTCTGACTCACCTTATGTAGTTTCTGTTTCCTTACATAGTCCAAAAAAGCATAATATCGCTGGTTCTAGAAGGGGTCGGTCCTCTCAGTCATTTAGTAAGAGAAATGCTATTAAAAGATCTGTTACAGGTAGCTTACTTAGTGCTGAGCATAAGGATCATTCGCCTAGCAGCCAGGCTACAAGTGGGGAATTACCTTCAAAAGATATGGTTTTAAAAGAGTCCGAGATTTACTGTGACGCAGGAACAAATCAATTTTCTGGATCTGCCAAAAAATCAAGATTAGGTAGTGGTAAAAATGGGAAAGGAAGTGTGAAGGGCAATAAATCTGCACCAACAATTACAACTGATTCTGATACAAAGCTTCATAGTAACAATGATGGAAATGGATCTCTAAGAAAAGTTAAAGTTAATTTCTCAGAAAAGAAGAAAAATGCTGGAACTACGCAGCCTAAAGAAGTTGAGCTTGTTGAGGTTGAAGACAAGGAATTGAAATTAAAGGATCTGCTTTCTTCTAAAAGGTCTACTGTTAAAGAGTCGGGTAATGATGAGATCAATGTGAAGGATACTATTAAACCAAAATCCAAGAGGAAACGTACTCGGGGCTCAAAATGGACTACTGGACCACGAAAGCGTAGGAAACGTTCGAATCACACACTTATTGGTTCTAATATAAAAGTTTGGTGGCCAGATGATGAAAGGTTTTATGAAGGCGTTGTTGATTCTTTTGAAGAGGGTACAGAGATGCATAAAATTTTGTATAATGATGGTGATGTAGAGGTGCTGCTTCTAAAGAATGAGAAATGGGAGTTTGTTGAAGGAGATACCAAAATGGATGCGGAGGAAAAGGATAAACCTGATGTTAATGCTTCCGAAGCGACTAAGAAATCGAAAGGCAGCAGCACCGGTACCTCCGCTGAAAAGTCGAAAATGGTTGATCTGCCAAGGAGCAGCAGCCCGGATATCGCTGACACAAGTGCGGATCGTCCCAAGCATAAAGGTCGGAAGACAATAAACAGGCATACCAATGAAGACGAGAAACAGGCGGATGACATCTGGATCAAGCCAGAGAGAACTTCCTCTAATAAGAGTAGTAAGAATAATAAGAAAAAGATGAAGAAGAAGATTAAGAATGGCCGCTCTTCCAATAATAGGGGCAAGGTTGTGAATAATGATAGGCTCCTCCCAGTTTCAGAGGAAGAAGCCTCCTCCAGATCCAGCAAAAGGTCTAAAGGCAATATTAATATTTCTGGTAATAAATCTGGAGCTGCTGATGTCCCCCCCAAACTTGGCAGGAAGAAGAAGGGCTCAATTCTGAAGGCTGATTCTGGTACATCTGAGACCAATACTAAGAAGCGCAAGCGGGGAAGGAGTAAAAAATAAAAAAACCCGGTGGTAATTTTTACTTGCATTGCGCCGAAACCTTGTAGTTTGGATGCCGGAGGGGTTATATTTCAAAGATTGCGGCGCTCTGCTGGCAAATGTTCCATAATTAAAAAGAAAAATGGCTTCTTGGAATTGTGGGCATTTTTTGGTGGGGTATGGGGATGATGGGATTTAGGATATATATATATATATATATA

Network for GWHGAAEX004281

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	91.090
SRP064423	SRR2545915	Juvenile tuber	71.950
SRP108465	SRR5643513	five period of Gastrodia elata	46.170
	SRR5643514	five period of Gastrodia elata	39.850
	SRR5643515	five period of Gastrodia elata	41.590
	SRR5643524	five period of Gastrodia elata	39.900
	SRR5643525	five period of Gastrodia elata	54.250
	SRR5643528	five period of Gastrodia elata	45.390
	SRR5643658	five period of Gastrodia elata	46.760
	SRR5643659	five period of Gastrodia elata	48.760
	SRR5643660	five period of Gastrodia elata	59.590
	SRR5643661	five period of Gastrodia elata	47.770
	SRR5643662	five period of Gastrodia elata	46.820
	SRR5643663	five period of Gastrodia elata	53.250
	SRR5643664	five period of Gastrodia elata	57.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	70.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.010
SRP279888	Gastro	Gastrodia elata tuber	55.74
	Juven	Juvenile tuber	67.02
	Mother_Gastro	Mother tuber of Gastrodia elata	36.90
	Mother_Juven	Mother tuber of Juvenile	49.43