Detail information of GWHGAAEX004283/evm.TU.scaffold_147.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|88657600|ref|YP_507548.1| | 0 | DNA topoisomerase I [Ehrlichia chaffeensis str. Arkansas] |
| KOG | KOG1956 | 0 | DNA topoisomerase III alpha |
| nr | gi|672130839|ref|XP_008788964.1| | 0 | PREDICTED: uncharacterized protein LOC103706593 [Phoenix dactylifera] |
| Swissprot | tr|C7J0A2|TOP3A_ORYSJ | 8.00E-25 | DNA topoisomerase 3-alpha |
| trEMBL | tr|J3MD99|J3MD99_ORYBR | 0 | DNA topoisomerase {ECO:0000256|RuleBase:RU000518} |
| TAIR | AT4G31210_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 2324693 | 2393079 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004283
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01751.21 | Toprim | 426 | 539 | 3.10E-21 |
| PF01131.19 | Topoisom_bac | 553 | 995 | 5.50E-107 |
| PF01396.18 | zf-C4_Topoisom | 1039 | 1073 | 1.70E-09 |
| PF13368.5 | Toprim_C_rpt | 1102 | 1163 | 5.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006265 | Biological Process | DNA topological change |
| GO:0003917 | Molecular Function | DNA topoisomerase type I activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003916 | Molecular Function | DNA topoisomerase activity |
| GO:0005694 | Cellular Component | chromosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.680 |
| SRR2545915 | Juvenile tuber | 18.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.880 |
| SRR5643514 | five period of Gastrodia elata | 14.160 | |
| SRR5643515 | five period of Gastrodia elata | 12.730 | |
| SRR5643524 | five period of Gastrodia elata | 12.480 | |
| SRR5643525 | five period of Gastrodia elata | 7.700 | |
| SRR5643528 | five period of Gastrodia elata | 7.200 | |
| SRR5643658 | five period of Gastrodia elata | 6.990 | |
| SRR5643659 | five period of Gastrodia elata | 15.590 | |
| SRR5643660 | five period of Gastrodia elata | 15.370 | |
| SRR5643661 | five period of Gastrodia elata | 13.660 | |
| SRR5643662 | five period of Gastrodia elata | 14.620 | |
| SRR5643663 | five period of Gastrodia elata | 15.800 | |
| SRR5643664 | five period of Gastrodia elata | 14.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.43 |
| Juven | Juvenile tuber | 26.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.49 | |
| Mother_Juven | Mother tuber of Juvenile | 17.79 |