Detail information of GWHGAAEX004290/evm.TU.scaffold_147.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2351 | 4.00E-78 | RNA polymerase II, fourth largest subunit |
| nr | gi|743852001|ref|XP_010940283.1| | 2.77E-82 | PREDICTED: DNA-directed RNA polymerase II subunit 4 [Elaeis guineensis] |
| Swissprot | tr|O48890|NRPB4_ARATH | 1.00E-78 | DNA-directed RNA polymerase II subunit 4 |
| trEMBL | tr|B3TLS8|B3TLS8_ELAGV | 1.00E-82 | RNA polymerase II 15.9 kDa subunit {ECO:0000313|EMBL:ACF06509.1} |
| TAIR | AT5G09920 | 4.00E-78 | RNA polymerase II, Rpb4, core protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000150 | 2585116 | 2597323 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004290
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03874.15 | RNA_pol_Rpb4 | 23 | 132 | 2.60E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03012 | RPB4, POLR2D | RNA polymerase | map03020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0030880 | Cellular Component | RNA polymerase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 59.990 |
| SRR2545915 | Juvenile tuber | 55.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.760 |
| SRR5643514 | five period of Gastrodia elata | 38.480 | |
| SRR5643515 | five period of Gastrodia elata | 42.040 | |
| SRR5643524 | five period of Gastrodia elata | 43.870 | |
| SRR5643525 | five period of Gastrodia elata | 49.290 | |
| SRR5643528 | five period of Gastrodia elata | 49.670 | |
| SRR5643658 | five period of Gastrodia elata | 39.800 | |
| SRR5643659 | five period of Gastrodia elata | 52.810 | |
| SRR5643660 | five period of Gastrodia elata | 49.300 | |
| SRR5643661 | five period of Gastrodia elata | 52.860 | |
| SRR5643662 | five period of Gastrodia elata | 52.030 | |
| SRR5643663 | five period of Gastrodia elata | 46.610 | |
| SRR5643664 | five period of Gastrodia elata | 38.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 67.72 |
| Juven | Juvenile tuber | 29.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.84 | |
| Mother_Juven | Mother tuber of Juvenile | 36.33 |