Detail information of GWHGAAEX004298/evm.TU.scaffold_148.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332664111|ref|YP_004446899.1| | 2.00E-128 | alpha-L-fucosidase [Haliscomenobacter hydrossis DSM 1100] |
| KOG | KOG3340 | 5.00E-57 | Alpha-L-fucosidase |
| nr | gi|672185532|ref|XP_008812847.1| | 0 | PREDICTED: alpha-L-fucosidase 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GW72|FUCO1_ARATH | 3.00E-161 | Alpha-L-fucosidase 1 (Precursor) |
| trEMBL | tr|C4J251|C4J251_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACR35251.1, ECO:0000313|EnsemblPlants:GRMZM2G013255_P01} |
| TAIR | AT2G28100 | 5.00E-57 | alpha-L-fucosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 61474 | 63567 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004298
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01120.16 | Alpha_L_fucos | 69 | 334 | 4.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01206 | FUCA | Other glycan degradation | map00511 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004560 | Molecular Function | alpha-L-fucosidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.140 |
| SRR2545915 | Juvenile tuber | 7.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.760 |
| SRR5643514 | five period of Gastrodia elata | 37.480 | |
| SRR5643515 | five period of Gastrodia elata | 15.730 | |
| SRR5643524 | five period of Gastrodia elata | 27.970 | |
| SRR5643525 | five period of Gastrodia elata | 15.460 | |
| SRR5643528 | five period of Gastrodia elata | 18.910 | |
| SRR5643658 | five period of Gastrodia elata | 13.640 | |
| SRR5643659 | five period of Gastrodia elata | 18.810 | |
| SRR5643660 | five period of Gastrodia elata | 19.310 | |
| SRR5643661 | five period of Gastrodia elata | 21.800 | |
| SRR5643662 | five period of Gastrodia elata | 7.320 | |
| SRR5643663 | five period of Gastrodia elata | 10.870 | |
| SRR5643664 | five period of Gastrodia elata | 8.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.56 |
| Juven | Juvenile tuber | 40.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.41 | |
| Mother_Juven | Mother tuber of Juvenile | 32.48 |