Detail information of GWHGAAEX004301/evm.TU.scaffold_148.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 2.00E-57 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743854520|ref|XP_010940921.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Elaeis guineensis] |
| Swissprot | tr|C0LGW6|ERL1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase ERL1 {ECO:0000303|PubMed:14985254} (Precursor) |
| trEMBL | tr|J3MAY7|J3MAY7_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G11810.1} |
| TAIR | AT5G62230 | 0 | ERECTA-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 128743 | 137339 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004301
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 77 | 6.20E-05 |
| PF13855.5 | LRR_8 | 131 | 190 | 2.60E-09 |
| PF13516.5 | LRR_6 | 248 | 265 | 0.43 |
| PF13855.5 | LRR_8 | 442 | 501 | 2.20E-08 |
| PF13516.5 | LRR_6 | 535 | 550 | 0.18 |
| PF00069.24 | Pkinase | 664 | 923 | 3.20E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XIIIb |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K20718 | ER | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.180 |
| SRR2545915 | Juvenile tuber | 6.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.500 |
| SRR5643514 | five period of Gastrodia elata | 6.210 | |
| SRR5643515 | five period of Gastrodia elata | 4.170 | |
| SRR5643524 | five period of Gastrodia elata | 5.490 | |
| SRR5643525 | five period of Gastrodia elata | 2.210 | |
| SRR5643528 | five period of Gastrodia elata | 1.910 | |
| SRR5643658 | five period of Gastrodia elata | 2.790 | |
| SRR5643659 | five period of Gastrodia elata | 13.940 | |
| SRR5643660 | five period of Gastrodia elata | 5.510 | |
| SRR5643661 | five period of Gastrodia elata | 3.230 | |
| SRR5643662 | five period of Gastrodia elata | 8.760 | |
| SRR5643663 | five period of Gastrodia elata | 16.060 | |
| SRR5643664 | five period of Gastrodia elata | 6.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.30 |
| Juven | Juvenile tuber | 2.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.53 | |
| Mother_Juven | Mother tuber of Juvenile | 1.09 |