Detail information of GWHGAAEX004302/evm.TU.scaffold_148.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|385809238|ref|YP_005845634.1|8.00E-58peptidyl-prolyl cis-trans isomerase A [Ignavibacterium album JCM 16511]
KOGKOG08843.00E-111Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase
nrgi|590722877|ref|XP_007052021.1|3.92E-111Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1 [Theobroma cacao]
Swissprottr|Q9LPC7|CP18A_ARATH3.00E-112Peptidyl-prolyl cis-trans isomerase CYP18-1
trEMBLtr|A0A061E1S1|A0A061E1S1_THECC1.00E-111Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}
TAIRAT1G019403.00E-111Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000147155090164406+
Transcript Sequence

Network for GWHGAAEX004302

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00160.20Pro_isomerase41524.00E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.700
SRR2545915Juvenile tuber30.490
SRP108465SRR5643513five period of Gastrodia elata25.270
SRR5643514five period of Gastrodia elata35.360
SRR5643515five period of Gastrodia elata28.750
SRR5643524five period of Gastrodia elata31.590
SRR5643525five period of Gastrodia elata50.830
SRR5643528five period of Gastrodia elata39.370
SRR5643658five period of Gastrodia elata39.770
SRR5643659five period of Gastrodia elata34.630
SRR5643660five period of Gastrodia elata31.080
SRR5643661five period of Gastrodia elata29.410
SRR5643662five period of Gastrodia elata30.420
SRR5643663five period of Gastrodia elata37.740
SRR5643664five period of Gastrodia elata28.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.520
SRR6049655Rhizomagastrodiae_C368-T10_good_120.560
SRR6049656Rhizomagastrodiae_C368-T07_good_115.410
SRR6049657Rhizomagastrodiae_C368-T07_good_112.220
SRR6049658Rhizomagastrodiae_C368-T04_good_114.480
SRR6049659Rhizomagastrodiae_C368-T04_good_111.020
SRR6049660Rhizomagastrodiae_C368-T01_good_116.620
SRR6049661Rhizomagastrodiae_C368-T04_good_113.220
SRR6049662Rhizomagastrodiae_C368-T01_good_117.880
SRR6049663Rhizomagastrodiae_C368-T01_good_114.930
SRR6049664Rhizomagastrodiae_C368-T10_good_122.000
SRR6049665Rhizomagastrodiae_C368-T10_good_122.000
SRP279888GastroGastrodia elata tuber 33.10
JuvenJuvenile tuber23.42
Mother_GastroMother tuber of Gastrodia elata 27.53
Mother_JuvenMother tuber of Juvenile 19.74