Gene detail

Detail information of GWHGAAEX004304/evm.TU.scaffold_148.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71279937\|ref\|YP_270348.1\|	9.00E-100	dihydrodipicolinate synthase [Colwellia psychrerythraea 34H]
nr	gi\|255561405\|ref\|XP_002521713.1\|	5.17E-171	dihydrodipicolinate synthase, putative [Ricinus communis]
Swissprot	tr\|Q9FVC8\|DAPA2_ARATH	1.00E-170	4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|B9S6U4\|B9S6U4_RICCO	2.00E-171	Dihydrodipicolinate synthase, putative {ECO:0000313\|EMBL:EEF40700.1}
TAIR	AT2G45440	3.00E-170	dihydrodipicolinate synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	197431	205555	-

Transcript Sequence
>GWHTAAEX004304 GTAGACCTCTTGCTTGCAAAGCTGCGCTCATCATTTAAGTTACATCCCAAAAAAAATACTACATAAATATTGGATTGTATTAACAAAAAGAAACTGAATCCATACAATCACAACAAATCAAAGTCAGATGCATCAGTGGTAGTGATTGGAACTTAAATATAGAACTCCACTAACCAACATTAACTAAAAAATATGTAGCATATCATAGAAGAAAAGATGAAGCACACATGCAGCAAATGAGTAGGCATATAATTTTGAGATAAAAATACACAAGTTTTGTCCATCATACACCGAAAGTAGCAGTTCGACAAATTTAGATAGCTGTGCTCAATTAAATTAGCAATTAAAAAAAACATAAGTCAATTCTTTATTTTGAAAGTGAATCAAACAGAAATAATAGAACAGAAAAAACCTAAGCAAATTGATCTTTCATTGGCAAGAAACGAAGTTATATGAATAGAAAGATATTAATCTTAATGGAGATTGTTTATTTTGGCGATGGAGGAGGAGAGAAACCGATGTAAGGCGTGCTTGATTTTGGAAACAAAAAAAAATCTGTTCAACATATTTAAATCGCTGTACTTATTTGGAAGATGAAGCACGCATGCAGCAAACGAGTGGACTATAGCTCCCTTACACACCATAACCCTAAAGGAAAGTCTAAGGAAGCTTCCTCATTCATCCACTCACCGTATTCCTTTCCCATTTTTTCTCTTTTTTTTGCCAATGCAGGTACCAATCTATTCTCCGCTCCTATCGTCTTGGTTTCGGTTCCAACCTTCCTCTGCTGTTATCTCTCTTTTTTTTCTCCCCTCCAAAGCCATCATTTTTAATTCGCGATCTGTGATCGGGCTGCATACTAGAAAGGGCGAGGGATAAACTAAGGAATGTCTTTGGCTGGCCGCTGTCTTTGTGCGAGCGAGTCGGCTTCTTCATTTGGGCTGCAGCTTCCGGGAATAAGCTTGTCGAAGTGGAAGAGGAGATGGGATATTCCAAAAGCCGCGCCCATTTCGAATTTTCATAGTCCGATGCACAGTCTCGAGGTTAAAACCAGGACTTCAACGGAGGAAATAAAATCCTTAAGGCTAATAACTGCAACAAAAACACCATACTTAACTAATGGAAGACTCGATCTCGAAGCTTACGATTCTCTGATTCGCACCCAAATAGCTAACGGCGTAGAAGGCGTTGTGGTCGGAGGGACGACGGGAGAAGGCCACCTCATGAGTAAGGACGAACGCGTAACGCTCATTGCCCACACCGTCGCCAGCTTCGGAGATTCGCTCAAAGTGATCGGCAACGCAGGAAGCAACTCAACAAGCGAGGCAATACTTGCGTCCGAGCAGGGCTTCGCCGTTGGCATGGACGCAGCGCTGCACGTCAATCCATACTACGGCAAAACATCGACGCTCGGCCTGAAATTCCATTTCGAGAGCGTCCTCTGCGTAGGCCCGACCATCATCTACAACGTGCCTTCCAGAACCGGCCAGGACATTCCTCCCCGCTTGATTTGCTCGATGGCCGGAAACTTTAACGCGATCGGGGTCAAGGAGTGTGCGGAAAGCACGACGGATGATCGAATCGGGGAATATGGGGCTCACGGGCTGGCCGTATGGAGCGGGAACGATGATCGGTGCCAAAACGCGAGGTGGGAGAGGGGGGCTTCCGGAGTTGTATCTGTTGCCAGCAACATTGTGCCGGGATTGATGCGTGAGCTCATGTTCGAGGGCCAAAACGCTTCGCTGAGCGCGAAGATGATGCCGCTGTTCCGGTGGCTGTTCTCTGAGCCCAATCCAATCGGCATTAACACGGCATTGGCTCAGCTTGGCATTGTGAGACCTGTATTTAGATTGCCCTATGCTCCTCTCCCGATCGAGAAGAGGGCAGATTTTGTTACCTTAGTGGAAGCCTTAGGCCGGGAGAGTTTCGTGGGGGTGAAGGATGTGCGAGTGCTCCAGGACGATGATTTTATTTTGTTGCGCCGTTATTAATACTTTAACGAAAAGTACTATGTTTTTATTATTAATTTTTTTTTTTTTG

Network for GWHGAAEX004304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00701.21	DHDPS	65	341	2.60E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01714	dapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0016829	Molecular Function	lyase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.250
SRP064423	SRR2545915	Juvenile tuber	2.450
SRP108465	SRR5643513	five period of Gastrodia elata	3.620
	SRR5643514	five period of Gastrodia elata	5.460
	SRR5643515	five period of Gastrodia elata	3.090
	SRR5643524	five period of Gastrodia elata	5.090
	SRR5643525	five period of Gastrodia elata	2.070
	SRR5643528	five period of Gastrodia elata	2.840
	SRR5643658	five period of Gastrodia elata	1.580
	SRR5643659	five period of Gastrodia elata	2.740
	SRR5643660	five period of Gastrodia elata	2.920
	SRR5643661	five period of Gastrodia elata	3.040
	SRR5643662	five period of Gastrodia elata	5.000
	SRR5643663	five period of Gastrodia elata	3.390
	SRR5643664	five period of Gastrodia elata	4.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.930
SRP279888	Gastro	Gastrodia elata tuber	4.35
	Juven	Juvenile tuber	3.03
	Mother_Gastro	Mother tuber of Gastrodia elata	5.74
	Mother_Juven	Mother tuber of Juvenile	4.57