Detail information of GWHGAAEX004308/evm.TU.scaffold_148.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17451.00E-94Histones H3 and H4
nrgi|565461548|ref|XP_006288773.1|7.96E-93hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
Swissprottr|Q71H73|H33_VITVI4.00E-95Histone H3.3
trEMBLtr|D7M3K5|D7M3K5_ARALL4.00E-93Histone H3 {ECO:0000256|RuleBase:RU004471}
TAIRAT5G109801.00E-94Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000147235823237056-
Transcript Sequence

Network for GWHGAAEX004308

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone11328.40E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms210.800
SRR2545915Juvenile tuber128.950
SRP108465SRR5643513five period of Gastrodia elata170.910
SRR5643514five period of Gastrodia elata212.200
SRR5643515five period of Gastrodia elata212.660
SRR5643524five period of Gastrodia elata184.790
SRR5643525five period of Gastrodia elata398.240
SRR5643528five period of Gastrodia elata419.540
SRR5643658five period of Gastrodia elata251.740
SRR5643659five period of Gastrodia elata145.010
SRR5643660five period of Gastrodia elata120.880
SRR5643661five period of Gastrodia elata128.660
SRR5643662five period of Gastrodia elata158.650
SRR5643663five period of Gastrodia elata147.370
SRR5643664five period of Gastrodia elata169.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1135.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1181.710
SRR6049656Rhizomagastrodiae_C368-T07_good_1155.010
SRR6049657Rhizomagastrodiae_C368-T07_good_1159.750
SRR6049658Rhizomagastrodiae_C368-T04_good_1163.580
SRR6049659Rhizomagastrodiae_C368-T04_good_1167.740
SRR6049660Rhizomagastrodiae_C368-T01_good_1162.700
SRR6049661Rhizomagastrodiae_C368-T04_good_1167.450
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.780
SRR6049663Rhizomagastrodiae_C368-T01_good_1130.350
SRR6049664Rhizomagastrodiae_C368-T10_good_1131.880
SRR6049665Rhizomagastrodiae_C368-T10_good_1131.880
SRP279888GastroGastrodia elata tuber 214.99
JuvenJuvenile tuber106.48
Mother_GastroMother tuber of Gastrodia elata 458.32
Mother_JuvenMother tuber of Juvenile 96.61