Gene detail

Detail information of GWHGAAEX004309/evm.TU.scaffold_148.18

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1267	Mitochondrial transcription termination factor, mTERF
nr	gi\|702373517\|ref\|XP_010062092.1\|	PREDICTED: uncharacterized protein LOC104449582 [Eucalyptus grandis]
trEMBL	tr\|A0A059BU30\|A0A059BU30_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW69155.1}
TAIR	AT2G44020	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	242245	248153	+

Transcript Sequence
>GWHTAAEX004309 GCCTGCATTGCTTTTAGCATAAACCCTACTGTATTTCTCGCACACTACATCGCTAAACAGAAACTCACAGCTCATGCGATCCTCGCTGTTTTATTTAGCCTCCTCCTTCACTCCTTGAATTCGGATGACCTTGCACCAAATCGCCGTCTCCATTCTCCACTAGGTTTTATCCTCATGTTTCTGCACATCCGAAAAGGTTTTACCAACATGTTTCCGCACATCCGACGGAAGCCTCCTATTCCCATCCCATGGCATCTCTTCTTCAACCAACTCTTACAGGTCCCTAACCCTAGTCCTTCTCCGAAAACAACCCCTTTCTCCACCCAGACCTCCAAGTACCCCGAGTACGAGATGCCCTCTGTCACCTGGGGAGTTGTCCAGGGACGCAAAGAGCGACTCGTCTCCCGCGTGATCATCTCCGACTATCTCAAATCCATCGGCATCGTCCCCAATGAGCTCGAGGATCTCGAACTCCCTTCCACCGTTGAAGTCATGCGGGGCCGCGTCGAGTTCCTCCAGCGCTTAGGCCTCACCGTGGACGACATGAACGAGTATCCACTTATGTTGGCCTGCAGTGTTCGCAAGAACATGGTGCCCGTCCTCGGCTACCTCGAAAAGATTGGCATCAGCCGCCCCAAGCTCGGCGAGTTTGTTCGCGGATACCCTCAAGTTCTCCATGCCAGCGTCATCGTCGAGCTTGCACCCGTTGTCAAGCTCCTCCGCGGCCTCGATGTTGAGCGCCATGATATTCCTTACGTTCTCCAGCGCTACCCAGAGCTTCTCAGCTTCAAGCTCGAGGGTACCATGAGCACTTCTGTCGCCTACCTTATCAGTATCGGCGTTTGGCCTAGGGACATAGGTCCCATGGTGACTCAATACCCTTATTTACTTGGCATGCGGGTTGGAACTACCATCAAACCTCTAGTCGACTACATTGTTTCACTCGGACTCCCCAAGAAGATTCTTTCACGTATGCTTGAGAAGAGGGCATATATTATTGGATACAATCTGGAAGAGACCGTGAAGCCCAATATTGATACTCTTATTAGCTTTGGTGTGAGGCGGGAAGCCCTGCCCTCGATGATCGCTCAATTTCCGCAGATTCTTGGCTTACCTTTAAAAGCTAAGCTATCGACCCAACTGTACTTCTTCAACTTGAAGCTTAAGGTAGACCCTGATGGATTTGCTCGGGCTCTGGAGAAGATGCCTCAGATCGCTAGTCTCTCTCAGAATATTCTTATGAGGCCTGTGGATTTTCTCAGGGGTCGAACCGTAGCGGATGAAGATGTTGCCAGGATGATTGTGAAGTGCCCCCAACTGTTGGTATGCCGTGTTGAGCTAATGAAGAACAGTTTCTATTTCTTCAAGAGTGAAATGAAGAGACCACTGAAAGAGCTATTGGAATTTCCAGATTATTTCACATACAGTTTAGAGTCAAGAATAAAGCCTAGGCATCAGAAATTGGTTGAGAAAGGGATTAAGTGCAGCTTAGCATGGCTTTTGAATTGCAGTGATAGGAGATTTGAGGAGAGATTAAGAGCTCAGTACATTGAAGAAGATACTGCTGGACCTTCATTCCTTATAGGAGGAAAGCTGGAGATGCCTGGGAGTCATCATGTATCTGAGCAAGAGGACAGTGACAATGATGATGAAATACTTTACAGGAGAACTGTTTCTCTCTAACAACTTATTTGCAAATTGGCTTCTCCGGATGCTATTGACGGTGAGATTTTGGTTGTTAAAACCTCGTTCCCAATACTGTCAAAATGTCAAAGACATTGAATGTCTTCAAGTGTTCTATGCCAAGCGCATCAGAGTTTGGGATGTAGAACTGCCAACCTTGTTAATCTGTTCTTTATATTATTTTGAGGTTCAACCTTAATATCAAGAATCATTGTTATATACAAATACTTTATTCAATTCTCTTAAATCTGCCTAACAATTCCAAGCCTTCTGTGGAGTTTCACCACTTCATTCTCATCTACAGTGTATCTGCATTCTCCTGGGTCATCATATCCAGCATCCCCTTAAGAGTCTTCCTGTGATTAAGCCGCTCTCTTCCCCATTTGTTGGGATCAACTGGAATTTGTTTACTTACCTCGAATCTCTGTGATGTTATCCTTGGCTATTCCTGCTGGCAATGGTTGATGAGTCCCAATCCATAAGGTGGTGCGGCTTATTTTACCTATTTTGTGGAAGGGGCTCAGAAAAAAAGACATCGCATTTGGTGCTCCTTTCTATAAATACTGCACTTTCTTTCATTTTTCGGTCGGGGAAAAAGGTTATTGCAACGAGCATAATAGATCTGTTGGGGTGGTGGGCTTTTTAAAGGAAGCCCAAGAAAGAGTAGTAGCAGGTATTTAAACAAAGCTGGTCAAACTAATGCTGTAATGCTATTTTATCATTATATTTAGGCATGCTAATAGTTGATGAAATATACTTTTTATTGTGTTTATCAATAATATAAAAGTCATTTTATCAAAACAATTCAAGATACTACCGTGTATTTATATTTGATAGCAGTTTTTCTTCAAGCTGATTTGATAATTGATTTAT

Network for GWHGAAEX004309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	143	451	4.30E-104

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.810
SRP064423	SRR2545915	Juvenile tuber	5.380
SRP108465	SRR5643513	five period of Gastrodia elata	7.260
	SRR5643514	five period of Gastrodia elata	5.550
	SRR5643515	five period of Gastrodia elata	7.970
	SRR5643524	five period of Gastrodia elata	5.890
	SRR5643525	five period of Gastrodia elata	8.870
	SRR5643528	five period of Gastrodia elata	6.470
	SRR5643658	five period of Gastrodia elata	5.170
	SRR5643659	five period of Gastrodia elata	10.250
	SRR5643660	five period of Gastrodia elata	9.380
	SRR5643661	five period of Gastrodia elata	10.030
	SRR5643662	five period of Gastrodia elata	12.150
	SRR5643663	five period of Gastrodia elata	11.110
	SRR5643664	five period of Gastrodia elata	19.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.250
SRP279888	Gastro	Gastrodia elata tuber	10.38
	Juven	Juvenile tuber	9.28
	Mother_Gastro	Mother tuber of Gastrodia elata	6.83
	Mother_Juven	Mother tuber of Juvenile	7.79