Detail information of GWHGAAEX004314/evm.TU.scaffold_148.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|51893978|ref|YP_076669.1|9.00E-12glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
KOGKOG01172.00E-164Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nrgi|672199191|ref|XP_008777550.1|0PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X2 [Phoenix dactylifera]
Swissprottr|O22173|PABP4_ARATH1.00E-19Polyadenylate-binding protein 4
trEMBLtr|D7U819|D7U819_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI38701.3}
TAIRAT4G008302.00E-164RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000147416038431591-
Transcript Sequence

Network for GWHGAAEX004314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11121821.20E-20
PF00076.21RRM_11922588.50E-11
PF00076.21RRM_12873552.30E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms405.840
SRR2545915Juvenile tuber332.120
SRP108465SRR5643513five period of Gastrodia elata137.610
SRR5643514five period of Gastrodia elata121.370
SRR5643515five period of Gastrodia elata124.950
SRR5643524five period of Gastrodia elata122.820
SRR5643525five period of Gastrodia elata168.580
SRR5643528five period of Gastrodia elata148.890
SRR5643658five period of Gastrodia elata161.660
SRR5643659five period of Gastrodia elata221.490
SRR5643660five period of Gastrodia elata246.470
SRR5643661five period of Gastrodia elata215.910
SRR5643662five period of Gastrodia elata304.350
SRR5643663five period of Gastrodia elata283.980
SRR5643664five period of Gastrodia elata376.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1232.900
SRR6049655Rhizomagastrodiae_C368-T10_good_1208.460
SRR6049656Rhizomagastrodiae_C368-T07_good_1211.440
SRR6049657Rhizomagastrodiae_C368-T07_good_1260.080
SRR6049658Rhizomagastrodiae_C368-T04_good_1269.900
SRR6049659Rhizomagastrodiae_C368-T04_good_1285.940
SRR6049660Rhizomagastrodiae_C368-T01_good_1235.540
SRR6049661Rhizomagastrodiae_C368-T04_good_1240.980
SRR6049662Rhizomagastrodiae_C368-T01_good_1171.140
SRR6049663Rhizomagastrodiae_C368-T01_good_1193.940
SRR6049664Rhizomagastrodiae_C368-T10_good_1167.820
SRR6049665Rhizomagastrodiae_C368-T10_good_1167.820
SRP279888GastroGastrodia elata tuber 379.77
JuvenJuvenile tuber176.45
Mother_GastroMother tuber of Gastrodia elata 118.49
Mother_JuvenMother tuber of Juvenile 146.85