Detail information of GWHGAAEX004319/evm.TU.scaffold_148.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-12RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01498.00E-28Predicted RNA-binding protein SEB4 (RRM superfamily)
nrgi|743775187|ref|XP_010917972.1|8.58E-31PREDICTED: RNA-binding protein 24-like [Elaeis guineensis]
Swissprottr|P10979|GRPA_MAIZE2.00E-13Glycine-rich RNA-binding, abscisic acid-inducible protein
trEMBLtr|W9S430|W9S430_9ROSA8.00E-31RNA-binding protein 38 {ECO:0000313|EMBL:EXC13675.1}
TAIRAT2G467808.00E-28RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000147534637534938-
Transcript Sequence

Network for GWHGAAEX004319

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_127714.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.560
SRR2545915Juvenile tuber7.660
SRP108465SRR5643513five period of Gastrodia elata1.730
SRR5643514five period of Gastrodia elata2.080
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.700
SRR5643659five period of Gastrodia elata0.670
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.760
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.460
SRR6049655Rhizomagastrodiae_C368-T10_good_111.980
SRR6049656Rhizomagastrodiae_C368-T07_good_16.350
SRR6049657Rhizomagastrodiae_C368-T07_good_10.930
SRR6049658Rhizomagastrodiae_C368-T04_good_11.020
SRR6049659Rhizomagastrodiae_C368-T04_good_12.410
SRR6049660Rhizomagastrodiae_C368-T01_good_11.880
SRR6049661Rhizomagastrodiae_C368-T04_good_12.310
SRR6049662Rhizomagastrodiae_C368-T01_good_11.740
SRR6049663Rhizomagastrodiae_C368-T01_good_11.700
SRR6049664Rhizomagastrodiae_C368-T10_good_15.940
SRR6049665Rhizomagastrodiae_C368-T10_good_15.940
SRP279888GastroGastrodia elata tuber 0.56
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.00