Gene detail

Detail information of GWHGAAEX004320/evm.TU.scaffold_148.31

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2079	Vacuolar assembly/sorting protein VPS8
nr	gi\|743879983\|ref\|XP_010908528.1\|	PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X4 [Elaeis guineensis]
trEMBL	tr\|M0S1D6\|M0S1D6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19780_001}
TAIR	AT4G00800_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	562018	642918	+

Transcript Sequence
>GWHTAAEX004320 ATGGAGTTCGACCTCGATTCCTTTCTGCGATCGCGCGGTGGCGTCTCTTTAGACAGCAGCGATGAAGACGAGTCCACTGCAACCCATCGCCGCACCGTTGATGAAATCCTCAACGATACCGATTCGAGTTCCTCTTGCTCTCCCCATGCTCTGCCTAACTTATCCTGCGATCTATCGATAGAGGATGGCACAATGCTTAAGGAAGAACAAATTGATGAACGCGATGACGATCACTCTTCACCTGTTGTGGAAGCCCCAGACGAACTCTACAAGTGGAAAACAAGAACTGGGGAATTATCATTCTCTTCCTACCTCCCGTCCGCGGAGTATGCGAGCTATTCCAAATCTTTGAGCAGTTTATCTACATCCCACCTCCCTTTTTCTTCTCTATTTAGTGGGGTAAGCTCGAAGCCTAAGCCTGGCGCAGCCGTTGCAGCTGCTGCAGCTGCTTCTAGGTCTGTTCCTACTCCTCACGCTGCGGCAATCAAGTCTAAAAGAGCAATCGGAGAAAATAATATTAAGATTTCTCTTCATAAGGATACACAAGAAAGTATGGATGTGGGAGCGAGTTTTGTTAGGGAAGTTTTAGATGAACCTGATTTTTCATTGGTAGCCTTATCTAGAAGGGGAGGAAATGAGGATGATGAATTGTTAGAATCCTCCTTACCAGCTGAATCTTCTTCTTTGTCAGCTCTTGGAAAAAAACATGAAATGCTTCTAGGTGTAGAGGTTTCTTCTGAGGAAGAGCAGTCTTTTATGGCTATTGATGGAGACACCTCTGAGAAACTGAATGAGGATTTATCCTACACTTTTATCTTCCCAAAATGTTCTGAGAAGTCTTCCTCTTTATCATCTGCATCTGACACTCATACGAATGCTCTCATGTTGAATGATGAATTCTTAGCTTCAAAGGAGACTAAAGTCAATACTGAAAATGCTGTTCCTACTAATGAAAGGATGTTGAAAAATTTAGAAACTGATGGATATAGCTATTCTACTAATGATGACAAAAATAGTAGCATTGAAGAAGAGAGTGGGACTTTAAGTGAGATGGATAGCCTGTCTAGCGAGATAGCAAATGATATTGAATGCTCAGATAATGCAGATAAGAAATCACGGGCAAGTATGAAGCCTTTAGACTGGGCTGAAGAGCTCGAAAAGCGAAAAGCATCGTTTGGTCTTCATTGGGAGGAGGGCGCAGCTGCTCAGCCAATGAAGCTTGAAGGCATTCGCAGGGGACCACCTGCAATTGGCTATCTGCAGATGAACCTTGACAACTTGATTACTCGTGCAGTTTCTTCACAAACGTTCAAGCATGATTATGGATTACCCCATGTGCTTGCTGTCCATATGCATTTTATAGCAGTGGGCACATCAAAAGGCGTTGTTCTTGTTTTTGCCTGCAAGTATTCTCCTCATCATACTGATTACATGGATGAAAAGATGCTTACATTTTGTTCATCTGGTGACAAAATTCCAGCATCTGTGACTTCCATGTGCTTCAATCAACAGGGTGACCTACTGCTAGTTGGATACAGTGATGGCCATTTGACTATATGGGATGTACAAAAAGGAACTTCTGCTAAAGTTATCACTGGAGAGCATAATGCACCAGTAACACATACTTTGTTTTTGGGTCAAGATTCACAAGTTACACGCCAATTCAAAGCTGTTACAGGAGATTCCAAGGGTCTTGTTCTACTGCACACTTTCTCTGTGCTTATTCTTCTTAACCATTTATCCATTAAGACTCAGAGCCTTCTCGATGGCAAAAACAATGGCACTGTATTGTGTGCATGCCCTATTGTGATGGATAATCCTCAAGATATTGGCAGCACATCTGCCCAAGTTTCTCCCTCTGTCCCTTCAAGTGGTCTAGGTAGCATGGTTGGTGGTGTAGTTGGTGCTGTTGGAGGTGACACTGGATGGAAGCTGTTTAATGGCAACTCCTCCATAGTTGAGGAAGGTGTGGTTGTTTTTGCCACAAACCAAAATGCTCTAGTGTTAAGGCTCAGTCCTACTGTGGAAGTCTACGGGAAACTATCCAGACCAGATGGAGTACGAGAAGGTTCCATGCCTTATGCTGCATGGAAATGTATGAACTATACTCATGATTCATCTATAGATAAAGTTGCATGGCTTGCAATAGCATGGGATAAGAAAATTCAGATAGCCAGGTTGGCTAAATCAGAGATCAAACAACACAAAGAGTGGATACTGGACAGCACAGCAATAGGTGTTGCTTGGCTGGATGATCAGATGCTGGTGGTTATTACCGTCAAAGGACAACTTTGCTTGTTTTCAAGGGATGGAGCAGAGATTCATCAAACAAATCTTACTATAGATTGCTCTAGCATTGAAGATTTCATCATATATCATACTCACTATATGAATAGCGTTGGAAATCCAGAAAAGTCTTACCATAATTCAGTAGCTGTAAGAGGGTCTACAATCTATATACTTGGGCCAATGCACCTCATAATTTCTCGCCTTCTCCCTTGGAAGGAACGAATTCAGGTGCTTCAGAGAGCAGGTGACTGGATGGGTGCATTAGATATGGCAATGAAACTTTATGATGGCCATGCACATGGAGTAATTGATCTCCCAAGAACAGTAGATGCTATCCGTGAGGCCATTATGCATTATCTAGTTGAACTGATCTTATTGTATGTTGACGAAGTATTCTCTTATATATCCGTAGCCTTTCACAGCCAAAGAGATAAATTTGCCTTAAAGGACTCTAGCATGATGGACAGCTGCGTGCGCTCAGAAAGAGAGGAGCAATATGCTCGTGTTGGTGGGGTTGCAGTAGAATTTTGTGTTCACATAAAATTAACTAACTTATTGTTTGATGAAATCTTCTCAAAGTTTCTTGCTGTTCAGCATGAAGGCACTTTTTTGGAGATTTTAGAGCCATATATTTTAAGAGATATGCTAGGATGCTTGCCTCCTGAGATTATGCAAGCATTGGTAGAGCATTATAGTCGTAAAGGGTGGTTAGAACGAGTTGAACAGTGTGTTCTTCACATGGACATTTCTTCCTTGGATTTTAATCAGGTCGTGAGATTGTGTCGGGAACATGGATTGTATAGTGCACTGATATATCTTTTCAATCGAGGTTTAGATGATTTCAAGGCACCTTTAGAGGAGCTCTTGCTGGTTGTACAGAATATTTCAAAAGTGGATGCTGCTGCCATTGGGTACAAGATATTGGTTTATTTGAAGTATTGTTTTCAAGGTCTTGCATTTCCTCCAGGACATGGTTGTCTTTCTCGTTCTAGATTGACTTCAGTTAGAAAAGAATTGATGGACTTTTTACTTGAAGATTCTAAAATTTCAACTCCACTAGTGTCAAAAAATCTCAAATCTTCTGGCGGAAAATTGTCAAACCTTTCCTATATTCTTTACTTGGATACTGAAGCTGCTTTGGACGTTCTGAAGTGTGCTTTCAACGAAACAGAATTCAGTAATGACCCATCAGTTCTTGACTTGGTGGTTTCTCATGATAATCTAGGAAATCAGCATGAACATGAGTATTCAATGCCCCATTATACAATGGTGCAAAGTATTGCAAATGCTCTAATATCTATTCTCGGCTTGGAATCTGATATTATTTTGTTCTTTGAGATGGATGACTGGCCTTTAGAAAAAGATGTACATATTATACTTGATTTCCTAGCATATCTTGTTACAAATAAAAAAGCTACAATTTCTACTAGAGTATTGAAGCATCTTCTTGAATATTTGACATCATCAAAGCCACTAATTGACTGCAGTGTGCCAGTTAAATCTGTACTAAAGGAGAGACAGGTACTTTCTGTTTTGATGGCAACACCACAGGAAATCTGGAATTTTTCTTTTATTTTGTCTCTTTGCTTGGAGGCTAAATTCTTTCAGGCATGTGGCTTGATTCATTACATCAAAGGAGAACATGTCGCTGCCCTAGATAGCTATATGAAGGATTTGGATGAGCCTATCCATACATTTGCTTTTATTAACAAGTTGTTCTTGCAACTGGGCAGTGAGGAAGCTTTATCATTTCAGTCAGCAGTTATTTCTAGAATTTCTGAGCTTGTTAAACTTAGCAGGGAATGCACCTTTTTATTGGTAATTGACCAACTAGATAGTGAGAGGCAGAACATTATTTCTGAACTTCATTCTCATGAACAAAGCCTTTTTCTTTTCATGAAGACTGTAATAGATGTTCATATATCTGGCACAATCAACATACCTGTGACTAAAGGTTTTTCTATCTCAACTCCTCTTGATATTAGTGATTTGCCTATTGGAATTGCAGATTACTTGGAAAAACTTTTAAATTTTCCAAAGCTTTTGCATCATGACACAATTCAAGTAACAGAAGAGATGGCAGAATTGTATCTAAAGCTTTTGTGCCAGTTTGAACGCAGCTCTGTCCTGAAGTTCTTGGAAACTTTTGATAATTATAGACTGGAGCACTGTTTGAGACTTTGCCAAGAATATCATGTTACAGATGCGGCTGCATTTTTGCTTGAGAGAGCTGGTGATGTGTCTAGTGCTTTGGAACTTTTGATGTCTGGGCTTGATGATAAAACTGAATTTCTTGTTTTTGCCGTTGTCAATAATTTCTCTGATTTGACTTCAAGGAAAAACTCAGAAACAGACATACTTGCAGATATCTTGAAACTTACTGAGGCACTTGCTGTTCGCGATGTTTTATGTGCCTCTGTTGCGTTGTGCCAAAGAAACAATCAGCGTTTGGATCGTCAGGAGTCCGAGTCACTTTGGTTAAAGTTATTTGATTCGTTCTCTGAGACGGTTCAGAGATTTTGCAGTAGCGTGGATGTTCCTGAACGGAAAAACAATTATGGAAAAATGTTCGAATCCTTTTCTGGATATAAGGTATCAAAACTAAAGAAATGCGGTAATCTCTTGAGAAGAGTATTTTTCCAATTCATTGGAGAAATCATGGAGGGAATGACGGGCTATTTACCTCTCCCAGCAGTTATGTCTAAACTTCTTTCAGACAATAAAAATCAAGAGTTTGGTGATTTTAAAATGACTATTCTGAAATTGTTGGGAACGTACAACTTTGAGAGAAGAATACTGGATACTGCCAAATCATTAATAGAAGATGACACGTTCTATGCAATGAATGTTCTAAAGAAGGGTGTTTTACATGCTTTAGCGCCACAGAATTTAATCTGCTGCTTTTGTGGCTTACCTCTTACCAAGGGATCGCTTGCTTCAGGGATCCGCATATATAACTGTGGACACACAGTTCATCTTCACTGCGAATCTGGAGAAAATGAATCCCATAACACATATTCTGAAGGTGCTTGCCCTGTTTGTTATCAGCATAGGAAGACTTCGAAGGCAAGAGACAAATCCAGTATGATTGAGAATGGGTTAGTTATTAACCTCGCTTCTACTTCACATCACAGTCGAGCAAGCTCTGGTTTGCAGCATATTCATGAAACTGATTTGACTGATAAGCCTTGTGGCTTCCAGCATATGTCTAGATTTGATATCTTGAATAATCTACAGAAACAAAAGTCTCTTCAAATGGATATTGTGCCTCAGTTGAGACTTGCGCCTCCTGCAATTTACCATGAAAAAGTTCAAAAGGAGTCTGTTTCCTTGACGAGGGAGATGAAAGAGACGGTGCTGAAGAAAGAAAAACTAAGTAGACGCTGGCAGCTTATGGAACAGAAATCAAAGGGTTCAGCAAGCAGATTTACTTTAAAGTCGAGCATTTTTGGAACTGAGAAAAATAAAGTGCGTTGA

Network for GWHGAAEX004320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.6	ANAPC4_WD40	450	537	1.40E-05
PF12816.6	Vps8	965	1150	2.10E-54
PF00637.19	Clathrin	1431	1527	3.00E-09

Protein Sequence

>GWHPAAEX004320
MEFDLDSFLRSRGGVSLDSSDEDESTATHRRTVDEILNDTDSSSSCSPHALPNLSCDLSIEDGTMLKEEQIDERDDDHSSPVVEAPDELYKWKTRTGELSFSSYLPSAEYASYSKSLSSLSTSHLPFSSLFSGVSSKPKPGAAVAAAAAASRSVPTPHAAAIKSKRAIGENNIKISLHKDTQESMDVGASFVREVLDEPDFSLVALSRRGGNEDDELLESSLPAESSSLSALGKKHEMLLGVEVSSEEEQSFMAIDGDTSEKLNEDLSYTFIFPKCSEKSSSLSSASDTHTNALMLNDEFLASKETKVNTENAVPTNERMLKNLETDGYSYSTNDDKNSSIEEESGTLSEMDSLSSEIANDIECSDNADKKSRASMKPLDWAEELEKRKASFGLHWEEGAAAQPMKLEGIRRGPPAIGYLQMNLDNLITRAVSSQTFKHDYGLPHVLAVHMHFIAVGTSKGVVLVFACKYSPHHTDYMDEKMLTFCSSGDKIPASVTSMCFNQQGDLLLVGYSDGHLTIWDVQKGTSAKVITGEHNAPVTHTLFLGQDSQVTRQFKAVTGDSKGLVLLHTFSVLILLNHLSIKTQSLLDGKNNGTVLCACPIVMDNPQDIGSTSAQVSPSVPSSGLGSMVGGVVGAVGGDTGWKLFNGNSSIVEEGVVVFATNQNALVLRLSPTVEVYGKLSRPDGVREGSMPYAAWKCMNYTHDSSIDKVAWLAIAWDKKIQIARLAKSEIKQHKEWILDSTAIGVAWLDDQMLVVITVKGQLCLFSRDGAEIHQTNLTIDCSSIEDFIIYHTHYMNSVGNPEKSYHNSVAVRGSTIYILGPMHLIISRLLPWKERIQVLQRAGDWMGALDMAMKLYDGHAHGVIDLPRTVDAIREAIMHYLVELILLYVDEVFSYISVAFHSQRDKFALKDSSMMDSCVRSEREEQYARVGGVAVEFCVHIKLTNLLFDEIFSKFLAVQHEGTFLEILEPYILRDMLGCLPPEIMQALVEHYSRKGWLERVEQCVLHMDISSLDFNQVVRLCREHGLYSALIYLFNRGLDDFKAPLEELLLVVQNISKVDAAAIGYKILVYLKYCFQGLAFPPGHGCLSRSRLTSVRKELMDFLLEDSKISTPLVSKNLKSSGGKLSNLSYILYLDTEAALDVLKCAFNETEFSNDPSVLDLVVSHDNLGNQHEHEYSMPHYTMVQSIANALISILGLESDIILFFEMDDWPLEKDVHIILDFLAYLVTNKKATISTRVLKHLLEYLTSSKPLIDCSVPVKSVLKERQVLSVLMATPQEIWNFSFILSLCLEAKFFQACGLIHYIKGEHVAALDSYMKDLDEPIHTFAFINKLFLQLGSEEALSFQSAVISRISELVKLSRECTFLLVIDQLDSERQNIISELHSHEQSLFLFMKTVIDVHISGTINIPVTKGFSISTPLDISDLPIGIADYLEKLLNFPKLLHHDTIQVTEEMAELYLKLLCQFERSSVLKFLETFDNYRLEHCLRLCQEYHVTDAAAFLLERAGDVSSALELLMSGLDDKTEFLVFAVVNNFSDLTSRKNSETDILADILKLTEALAVRDVLCASVALCQRNNQRLDRQESESLWLKLFDSFSETVQRFCSSVDVPERKNNYGKMFESFSGYKVSKLKKCGNLLRRVFFQFIGEIMEGMTGYLPLPAVMSKLLSDNKNQEFGDFKMTILKLLGTYNFERRILDTAKSLIEDDTFYAMNVLKKGVLHALAPQNLICCFCGLPLTKGSLASGIRIYNCGHTVHLHCESGENESHNTYSEGACPVCYQHRKTSKARDKSSMIENGLVINLASTSHHSRASSGLQHIHETDLTDKPCGFQHMSRFDILNNLQKQKSLQMDIVPQLRLAPPAIYHEKVQKESVSLTREMKETVLKKEKLSRRWQLMEQKSKGSASRFTLKSSIFGTEKNKVR

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K20178	VPS8	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006886	Biological Process	intracellular protein transport
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.020
SRP064423	SRR2545915	Juvenile tuber	20.610
SRP108465	SRR5643513	five period of Gastrodia elata	10.270
	SRR5643514	five period of Gastrodia elata	11.490
	SRR5643515	five period of Gastrodia elata	10.110
	SRR5643524	five period of Gastrodia elata	11.320
	SRR5643525	five period of Gastrodia elata	8.920
	SRR5643528	five period of Gastrodia elata	7.160
	SRR5643658	five period of Gastrodia elata	8.700
	SRR5643659	five period of Gastrodia elata	11.000
	SRR5643660	five period of Gastrodia elata	12.400
	SRR5643661	five period of Gastrodia elata	9.940
	SRR5643662	five period of Gastrodia elata	10.250
	SRR5643663	five period of Gastrodia elata	11.510
	SRR5643664	five period of Gastrodia elata	13.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.040
SRP279888	Gastro	Gastrodia elata tuber	19.35
	Juven	Juvenile tuber	28.78
	Mother_Gastro	Mother tuber of Gastrodia elata	16.14
	Mother_Juven	Mother tuber of Juvenile	30.87