Detail information of GWHGAAEX004325/evm.TU.scaffold_148.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408402913|ref|YP_006860896.1| | 1.00E-22 | 30S ribosomal protein S10 [Candidatus Nitrososphaera gargensis Ga9.2] |
| KOG | KOG0900 | 6.00E-70 | 40S ribosomal protein S20 |
| nr | gi|719972182|ref|XP_010276806.1| | 8.42E-78 | PREDICTED: 40S ribosomal protein S20-2 isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q9STY6|RS202_ARATH | 2.00E-70 | 40S ribosomal protein S20-2 |
| trEMBL | tr|B3TLT0|B3TLT0_ELAGV | 3.00E-75 | Structural constituent of ribosome {ECO:0000313|EMBL:ACF06511.1} |
| TAIR | AT3G47370 | 6.00E-70 | Ribosomal protein S10p/S20e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 691035 | 698954 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004325
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00338.21 | Ribosomal_S10 | 24 | 118 | 9.20E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02969 | RP-S20e, RPS20 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015935 | Cellular Component | small ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 307.120 |
| SRR2545915 | Juvenile tuber | 361.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 602.310 |
| SRR5643514 | five period of Gastrodia elata | 604.150 | |
| SRR5643515 | five period of Gastrodia elata | 539.080 | |
| SRR5643524 | five period of Gastrodia elata | 542.310 | |
| SRR5643525 | five period of Gastrodia elata | 467.930 | |
| SRR5643528 | five period of Gastrodia elata | 457.470 | |
| SRR5643658 | five period of Gastrodia elata | 375.600 | |
| SRR5643659 | five period of Gastrodia elata | 502.510 | |
| SRR5643660 | five period of Gastrodia elata | 506.930 | |
| SRR5643661 | five period of Gastrodia elata | 536.890 | |
| SRR5643662 | five period of Gastrodia elata | 432.460 | |
| SRR5643663 | five period of Gastrodia elata | 460.720 | |
| SRR5643664 | five period of Gastrodia elata | 444.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 471.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 929.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 557.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 454.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 423.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 412.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 491.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 450.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 597.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 559.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 742.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 742.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 500.14 |
| Juven | Juvenile tuber | 388.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 303.09 | |
| Mother_Juven | Mother tuber of Juvenile | 236.52 |